| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_3363 |
|---|
| Symbol | |
|---|
| ID | 6311341 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | - |
|---|
| Start bp | 3590945 |
|---|
| End bp | 3592024 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 642652087 |
|---|
| Product | riboflavin biosynthesis protein RibD |
|---|
| Protein accession | YP_001926049 |
|---|
| Protein GI | 188582604 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
|---|
| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTCG CCCTGGCATT GGGACGGCGC AATCTCGGCC GGACTTGGCC CAATCCGAGC
GTCGGCGCCG TCGTGGTGAC CCCTGACGGC CGCATCGTCG GGCAGGCGGT GACGGCCCCC
GGCGGGCGGC CGCATGCCGA GCCGCTGGCG CTCGCCATGG CGGGCGAGGC GGCGCGCGGC
GCCACGCTCT ACGTCACCCT GGAGCCCTGC TCGCATCATG GCCGCACGCC GCCCTGCACG
GAGGCGACGA TCCGCTCGGG GGTCGCCCGC GTCGTCACCG CGATCGAGGA TCCGGATCCG
CGGGTGGCCG GGCGCGGCCA TGCCGGCTTG CGCGCCGCCG GAATCGCGGT CGAGACCGGC
CTGCTGCGCG AGGAGGCCGC CCGCGACCAT CGCGGCCATT TCAGCCGGGT GACGAAGGGC
CGTCCGAGCC TCCACCTCAA GCTTGCCCGC ACCCGCGACG GCTTCGCCGC CCCCTCGACC
GGCGAGCGGC TGAAGATCAC CGGTGCCATC GCCGACGGGG CGGTGCATCT GTGGCGGGCG
CATGCCGACG CGATCATGGT CGGCATCGGC ACGGCCCGGG CCGACGATCC GTCGCTGACC
GTGCGGCTGC CGGGGCTCAC CGAGCGCTCG CCGCTGCGGA TCGTCCTCGA CTCGACCCTG
CGCCTCAACC CGGCGAGCCA CCTCGTGCGC GGCGCCCGCG ACCTGCCGAC CCTGGTGCTG
ACCGGGCGCG GCGCCCCGGC CCATGCCCGG CGCATGCTCG CCTCCTTCGG GGTCGAGATC
GCCTTCGTCC CGACCGATGC GCAGGGCCGG ATCGATCTGC CCGCGGCGCT GGCCGCGCTG
GCGGAGCGCG GCCTCACGCG GATCTGCAGC GAGGGCGGGC CGGCGCTTGC CGATGCGCTC
GCCGCGCACG ATCTGATCGA TGCCTGCACC CTCATCACCG GCGCCGTCGC GCTGGGGGAA
GCCGGCGGCC TGCCGGCGCT CGGGCCCAAT CTCGCCCGCC GCCTCGCGGA CGGCTCCTTC
GCCACGGTCG AGACCCGCGA CCTCGGCCCC GACACGGCGA CCACTTACGA GAGGATCTGA
|
|---|
| Protein sequence | MRLALALGRR NLGRTWPNPS VGAVVVTPDG RIVGQAVTAP GGRPHAEPLA LAMAGEAARG
ATLYVTLEPC SHHGRTPPCT EATIRSGVAR VVTAIEDPDP RVAGRGHAGL RAAGIAVETG
LLREEAARDH RGHFSRVTKG RPSLHLKLAR TRDGFAAPST GERLKITGAI ADGAVHLWRA
HADAIMVGIG TARADDPSLT VRLPGLTERS PLRIVLDSTL RLNPASHLVR GARDLPTLVL
TGRGAPAHAR RMLASFGVEI AFVPTDAQGR IDLPAALAAL AERGLTRICS EGGPALADAL
AAHDLIDACT LITGAVALGE AGGLPALGPN LARRLADGSF ATVETRDLGP DTATTYERI
|
|---|
| |