| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_3335 |
|---|
| Symbol | |
|---|
| ID | 6311286 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | + |
|---|
| Start bp | 3560314 |
|---|
| End bp | 3562581 |
|---|
| Gene Length | 2268 bp |
|---|
| Protein Length | 755 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642652059 |
|---|
| Product | glycogen debranching enzyme GlgX |
|---|
| Protein accession | YP_001926021 |
|---|
| Protein GI | 188582576 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
|---|
| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.242143 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGAGA CCGACAGGAC CGGGATGCCG AAGCCGCGCA CATCGCGCAC GCGAATCCGC
GAAGGCTCGC CGCATCCCCG CGGTGCGACC TGGGACGGGC GCGGCGTCAA CTTCGCGCTG
TTCTCGGCCC ATGCCACGAA GGTTGAACTG TGCCTGTTCG ACGACGAGGG CAAGAACGAG
ATCGAGCGCA TCGAGCTGCC GGAATACACC GATGAGGTCT GGCACGGCTA TCTGCCCGAC
GCGCGCCCCG GCACGATCTA CGGCTACCGC GTCCACGGCC CCTACGAACC CGAGGCCGGC
CACCGCTTCA ACCCGAACAA GCTCCTGATC GACCCCTACG CCAAGGGGCT GGTCGGCACC
ATCGAGTGGA ACCCGGCCCT GTTCGGGTAC AAGATGGAGA CCGGCGACGA CCTCACCTTC
GACGAGCGCG ATTCCGCCCC CTACACCCGC CGCTCCCGCG TGATCGACCC GGCCTTCACC
TGGGGCCGCG ATGCCAAGCC CCGCGTGCCG TGGGAGCGCA CGATCGTCTA CGAGACGCAC
GTGAAGGGCT TCACCAAGCT GCACCCGGCG GTGCCCGAGA AGCATCGCGG CACCTATGCC
GGCATGGGCC ACCCGGCGGT GCTCGATTAC ATCAAGAGCC TCGGCATCAC CTCGGTCGAA
CTCTTGCCGG TGCATTCCTT CGTGCAGGAC GATTACCTGC AGCAGAAGAA TCTGATCAAT
TACTGGGGCT ACAACACCAT CTCGTTCTTC ACCCCGGCCC GGCGCTACGC CGCGGTGCCG
GACTTCGCCT TCTCCGAGTT CAAGGAGATG GTGGCGCGCA TGCACGGCGC CGGCCTCGAG
GTGATCCTCG ACGTGGTCTA CAACCACACG GCCGAGGGCA ACGAGAAAGG GCCGACCCTG
TCGTTCAAGG GCGTCGACAA CGCCTCGTAC TACCGGCTGC TGCCGAACCA GCCGCGCTAC
TACATCAACG ACACCGGCAC GGGGAACACC TTCAACCTGT CGCATCCGCG GGTGCTTCAG
CTCGTCACCG ACTCGCTGCG CTACTGGGCG ACCGAGATGC GGGTCGACGG CTTCCGCTTC
GACCTCGCCA CCATTCTCGG ACGCGAGCCC TACGGCTTCG ACGAGGGCGG CGGCTTCCTC
GATACCTGCC GCCAGGACCC CGTGCTCAAC GACGTGAAGC TCATCGCCGA GCCGTGGGAT
TGCGGTCCCG GCGGTTATCA GGTCGGCGGC TTCCCGCCCG GCTGGGCCGA GTGGAACGAC
CGGTTCCGCG ATGACGTCCG AGGGTATTGG AAGGGCGATG CCGGGCTGCT GCCGGGGCTC
GCCTCGCGCA TCACCGCCTC GGCCGACAAG TTCAACAAGC GCGGGCGCCG CCCCTGGGCC
TCGGTGAACT TCATCACCGC GCATGACGGC TTCACGCTCA ACGACACGGT CTCGTACAAC
GAGAAGCACA ACGAGGCGAA CGGCGAGGGC AACCGCGACG GGCACGGCCA CAACCTGTCC
TACAATTACG GCGTCGAGGG CCCGACCGAC GACCCCGAGA TCCGCTCGGT GCGGCTGCGC
CAGATGCGCA ACATGCTCGC CACCCTGTTC CTGTCGAAGG GTACGCCGAT GCTGCTGGCC
GGCGACGAGT TCGCCCGCAC GCAAGCCGGC AACAACAATG CCTATTGCCA GGACAACGAG
GTTTCCTGGG TCGATTGGGA TGCCATCGGC GAGGAGGAGC GGGATCTCAC CGAGTTCACG
CAGCGTCTGA TCCTTCTGCG CAACGCCCTG CCGATGCTGT CGCGCGGCCG CTTCGTGACG
GGCGCCTACG ACGAGGAATT CGGGGTCAAG GACGTCACTT GGCTCACGCC GGCCGGCACC
GAGATGAGCC CGGAGAACTG GAACGACGGC AATTCGCGCA CGCTCGCCGT TCTGCTCGAC
GGGCGCGCCC AGGCGAGCGG CATCCACAAG CGCGGCGGCG ATGCCACCCT GCTCCTGTTC
TACAACGCCT ATCACGACCT GGTGGACTTC ACCTTCCCCG AGGCGCCGGG CGGCACCGCC
TGGACGCGGT TGCTCGACAC CAACCTGCCC GACAGCCAGG AGGTGGAGAG CTTCGCCGTC
GGCGAGAGCT ACGCGGTCAC GGGCCGCTCG ATGCTGATGT TCGTCCTCAA GCCCATCGAG
AGCGAGAGCG AGGAGCACAC CGACATGGAG CGCTCCTACC AGTACGTCAT GCAGGCCTTC
GAGCGGGCGA ATGTCGAGAG CGTCCGCTTC GGCCTTGAGG AAGACTGA
|
|---|
| Protein sequence | MAETDRTGMP KPRTSRTRIR EGSPHPRGAT WDGRGVNFAL FSAHATKVEL CLFDDEGKNE
IERIELPEYT DEVWHGYLPD ARPGTIYGYR VHGPYEPEAG HRFNPNKLLI DPYAKGLVGT
IEWNPALFGY KMETGDDLTF DERDSAPYTR RSRVIDPAFT WGRDAKPRVP WERTIVYETH
VKGFTKLHPA VPEKHRGTYA GMGHPAVLDY IKSLGITSVE LLPVHSFVQD DYLQQKNLIN
YWGYNTISFF TPARRYAAVP DFAFSEFKEM VARMHGAGLE VILDVVYNHT AEGNEKGPTL
SFKGVDNASY YRLLPNQPRY YINDTGTGNT FNLSHPRVLQ LVTDSLRYWA TEMRVDGFRF
DLATILGREP YGFDEGGGFL DTCRQDPVLN DVKLIAEPWD CGPGGYQVGG FPPGWAEWND
RFRDDVRGYW KGDAGLLPGL ASRITASADK FNKRGRRPWA SVNFITAHDG FTLNDTVSYN
EKHNEANGEG NRDGHGHNLS YNYGVEGPTD DPEIRSVRLR QMRNMLATLF LSKGTPMLLA
GDEFARTQAG NNNAYCQDNE VSWVDWDAIG EEERDLTEFT QRLILLRNAL PMLSRGRFVT
GAYDEEFGVK DVTWLTPAGT EMSPENWNDG NSRTLAVLLD GRAQASGIHK RGGDATLLLF
YNAYHDLVDF TFPEAPGGTA WTRLLDTNLP DSQEVESFAV GESYAVTGRS MLMFVLKPIE
SESEEHTDME RSYQYVMQAF ERANVESVRF GLEED
|
|---|
| |