Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mpop_2217 |
Symbol | |
ID | 6308844 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylobacterium populi BJ001 |
Kingdom | Bacteria |
Replicon accession | NC_010725 |
Strand | + |
Start bp | 2371376 |
End bp | 2372200 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 642650942 |
Product | Rhomboid family protein |
Protein accession | YP_001924914 |
Protein GI | 188581469 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.0928322 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATGCCT CTCCCGATCT GCCGCACCAG GGCCGCGTTC CCGTCTTCAA CCTGCCGGGG ATCGTCACGA TCTCGATCGC GGTCCTGGCC GCGATCCACG GTCTCCGCAG CGTCCTGCCG GACGAGACCG ACCTGTCGGT GCTCCTGAAC CTCGCCTTCA TCCCCGCCCG CTGGACCGCC GCGTTCGATC CCGGATCGGC GGCCGAGATC ATCCGGGCGG CGGGGGAGGG GGCGGGCGGA GCCGAGATCG CCTCGGCGCG GCAGGACTTC GCCCGCTATC TCGTGGCCGA TCCGTCGTCG ATGCCCTGGA CCGGCGCGAC CTATGCCCTG CTGCACGGCT CCTGGGTCCA CCTGATCTTC AACGCGGTGT GGCTCGCCGT GTTCGGCACC CCGGTGGCGC GCCGCTACGG CGTCCTGCGC TACGGCTTGC TGGCGCTCGC CGGCATCGTC GCGGGCGCCG TCGTCCACCT CCTCGTCGAT CCCTACAGCC TCATGCCGCT GGTCGGCGCC TCGGCCGGCA TCTCGGCCCT GATGGCGGCG GCGGCCCGCT TCGTGTTCCA GCCTCCGCCC GCCTTCGTCG CCGGGGCGCC CTGGCAGCTC CCGCCGCGGC CGAGGCTGCA GACGATTCCC GAACTGATGC GCAACCGCCC GGCGGTGCTG TTCCTCGCCG TCTGGTTCGT CACCAACCTG CTGTTCGGCG TCCTCGCGCT CCCGCTCGGA GGCAATGAGG GGCCGATCGC CTGGGACGCG CATCTTGGCG GCTTTGCCGC CGGCTTCTTC CTGCTGCCGC TGATGGAACG GGGTTCTATC CGTCCGCACG GATAA
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Protein sequence | MDASPDLPHQ GRVPVFNLPG IVTISIAVLA AIHGLRSVLP DETDLSVLLN LAFIPARWTA AFDPGSAAEI IRAAGEGAGG AEIASARQDF ARYLVADPSS MPWTGATYAL LHGSWVHLIF NAVWLAVFGT PVARRYGVLR YGLLALAGIV AGAVVHLLVD PYSLMPLVGA SAGISALMAA AARFVFQPPP AFVAGAPWQL PPRPRLQTIP ELMRNRPAVL FLAVWFVTNL LFGVLALPLG GNEGPIAWDA HLGGFAAGFF LLPLMERGSI RPHG
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