Gene Mpop_1993 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMpop_1993 
Symbol 
ID6310093 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium populi BJ001 
KingdomBacteria 
Replicon accessionNC_010725 
Strand
Start bp2136436 
End bp2139348 
Gene Length2913 bp 
Protein Length970 aa 
Translation table11 
GC content70% 
IMG OID642650717 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_001924691 
Protein GI188581246 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCGCACGC TTTCTCTGGT CCTTGCGATC CTGACGGCCG TGGCGGGCGC TCTCGCCGGC 
CTCCTCGGGA CCACCGCCCC CGCCCACGCG GTCGAAGCCG TGCGCGTCAC CCTCGACGCG
CCAGCGATCG ACCTGACGCC GACGATCGAA CGCTACCGCT CCGACGGCGA CCTGATCCAG
ATCTCCACCG CCCCGGGCAA GGACGGCATC GTACGGCGCA TCGCGGTGAA GGCGCGCGAG
GCCGGCGCGC GGCCCGACTG GATGGTGTTC GCGCTCACCA ACGACACCGA CGAGCAGATC
GACCGCCTGC TGGTCGCCCC CCATTTCCGC CTCGTCGGTT CCGGGGTGAT CTGGCCCGAT
CTCGGCGGCT CGCGCATCGC CGCGATCACC GCGAGCGAGG GCATCCGCCC CGAGCGCGAC
GAGAGCCTCG ACGCCGACCA GTTCCTGATC ACCATCGATC CCGGCACGAC GGTCACCTAC
GTCGCCGAGC TGAAGGGGCC CAACATCCCG CAGGTCTACC TCTGGGATCA GGACGCCTAC
CGCAAGAAGA CCTCGGGGCT GACCCTCTAC AAGGGCATCA TCATCGGCAT CGCCGGGCTG
CTCGCGCTGT TCCTCACGAT CATCTTCGTG GTGAAGGGCG CGATCATCTT TCCCGCGGCA
GCCGCGCTCT CCTGGGCGGT GCTGGCCTAT GCCTGCATCG ATTTCGGCTT CCTCCAGCGG
GTCTTTCCGG TGACGGAGCT GGCGGAGCGG ATCTACCGCG CCTCGGCCGA GGCCGTGCTC
GGTGCCACCC TGCTCGTGTT CCTGTTCGCC TACCTGAACC TGTCGCGCTG GCACGTGCGC
TACAGCCACG TCGCCTTCTT CTGGCTGACC TTCCTTGCCG GCCTCGTGGC GCTCGCGGTG
TTCGATCCGC CGGTGGCGGC GGGCGTGGCG CGCATCTCCA TCGCCGCGGT GGCCGGCGTC
GGCCTCCTGC TGATCCTGTA TCTGGCCGTT CATAACGGCT ACGACCGCGC CATCCTGCTG
GTGCCGACCT GGCTGCTGCT GCTGGTCTGG GTGGTGGCGG CGGGCTTCGC CATCACCGGT
CAGATCGGCT CCGACCTCGT GCAGCCGGCG CTCATCGGCG GCCTCGTGCT CATCGTGATG
CTGATCGGCT TCACCGTGAT GCAGCACGCC TTCGCCGGAG GGGGGCTCAG CCACAGCCTC
GTCTCGGACA CCGAGCGCCG GGCGCTGGCG CTGACGGGGG CGGGCGACAT CGTGTTCGAC
TGGGACGTCC CCGGCGACCG CGTCTTCGCC GGACCCGAGA TCGAGGCGCA GCTCGGGCTC
AAGCGCGGCG CCCTCGAAGG GCCGGCGGCG AACTGGCTCG GCCTGCTCCA TCCCTTCGAC
GTGGAGCGCT ACTCGGCGGC CCTCGACACG GTGATCGAGG AACGGCGCGG GCGCATCATC
CACGATTTCC GCCTGCGCTC CGCAGACGGC CCCTACGCGT GGTACCGGCT CAAGGCCCGC
CCGGTGATCG GCACCGACGG CGAGGTGATC CGCATCGTCG GCACCATCAG CGACGTCACC
GAGGCGAAGA CCGCCGAGGA GCGGCTGCTG CACGATGCGG TGCATGACAG CCTCACCGGC
CTGCCCAACC GCGAGCTGTT CCACGACCGG CTGGAGGCCG CGCTGGCGCT GGCCAGCCAG
GATCCGCGCC TCAAGCCCGC GGTGATCGCG CTCGACATCG ACCGGTTCAA GGCAATCAAC
GACGCCATCG GCCTCTCGGC GGGCGACTCG ATCCTGCTCA CGCTCTCGCG CCGGCTCGGG
CGCCTGCTGC GGCCGCAGGA CACCCTGGCC CGGGTCGCGG GCGACGAATT CGCGGTGATC
CTGCTCTCCG AGCGCGAGCC CGACCGCATC CTGTCGTTTG CCGAGATGAT CCGGCGCGCC
ATCGCCACCC CCGTCACCTA TGCCGACCGC GAGGTGTTCC TCACCGTCTC TATCGGCATC
GCGCTGCACG AGGCCGCGCC GGGCGCGGGT CAAGGTGCCC AGCCGCGGCG GGAAGAGGTG
TTCAAGAACG CCGAGATGGC GATGATCCAG GCCAAGCGCG GCGGCGGCGA CCGCATCGAG
GTGTTTCGCG CCAACATGCG GCTGGAGCGC TCCGACCGGC TCATGCTGGA GGCGGACCTG
CGCAAGGCGC TGGAGCGCAA CGAGATCAAG GTGCTGTTCC AGCCGATCGT CCGGCTGGAG
GACCGCACGG TGGCGGGCTT CGAGACGCTC CTGCGGTGGG ACCACCCGAA GCTCGGACGC
ATCCCACCCT CGACCTTCCT GCCGGTGGCG GAGGAAACGG GCGTCATCGT CCCGCTCGGC
AACTTCGCCA TCGAACGGAC GGCGCTGGAA CTCGCCGCCT GGCAGCGCTC GCTCGACGTC
GAGCCGCCGA TCTTCGCCTC GGTCAACGTC TCCTCGCGCC AGCTCCTGCG CCACGACCTC
CTGCACGACG TGAAGACGGT GATCGCCCGC ACCGGCGTGC TGCCCGGCTC GCTCAAGCTG
GAAATGGCCG AGGGGCTGGT GATGGAGAAC CCGGAATACG CCGCGCAGAT GCTCACCCGC
ATCCACGACC TCGGCGCCGG CCTGATCCTC GACGATTTCG GCACCGGCTA CTCGGCGATC
TCCTATCTCC AGCGCTTCCC CTTCGACACG ATCAAGATCG ACCAGAGCTT CGTGCGCCAG
CTCGGCCAGG GCCGCACCGC CATGCTGCGC TCGGTGCTGC GGATGGGGCA GGAGCTCGGT
CTCGCCACCA TCGCCGAGGG CGCCGAGTCG GAGGAGGATG CGCAGGGGCT GCAGGAACTC
GGCTGCGACT ATGCGCAAGG CGCGGCCTTC GGCGAGCCGA TGACCGTGCT CCAGGCCCGC
CAGCTCGTCG GCGCCGCGCC CGAGGCGGCC TGA
 
Protein sequence
MRTLSLVLAI LTAVAGALAG LLGTTAPAHA VEAVRVTLDA PAIDLTPTIE RYRSDGDLIQ 
ISTAPGKDGI VRRIAVKARE AGARPDWMVF ALTNDTDEQI DRLLVAPHFR LVGSGVIWPD
LGGSRIAAIT ASEGIRPERD ESLDADQFLI TIDPGTTVTY VAELKGPNIP QVYLWDQDAY
RKKTSGLTLY KGIIIGIAGL LALFLTIIFV VKGAIIFPAA AALSWAVLAY ACIDFGFLQR
VFPVTELAER IYRASAEAVL GATLLVFLFA YLNLSRWHVR YSHVAFFWLT FLAGLVALAV
FDPPVAAGVA RISIAAVAGV GLLLILYLAV HNGYDRAILL VPTWLLLLVW VVAAGFAITG
QIGSDLVQPA LIGGLVLIVM LIGFTVMQHA FAGGGLSHSL VSDTERRALA LTGAGDIVFD
WDVPGDRVFA GPEIEAQLGL KRGALEGPAA NWLGLLHPFD VERYSAALDT VIEERRGRII
HDFRLRSADG PYAWYRLKAR PVIGTDGEVI RIVGTISDVT EAKTAEERLL HDAVHDSLTG
LPNRELFHDR LEAALALASQ DPRLKPAVIA LDIDRFKAIN DAIGLSAGDS ILLTLSRRLG
RLLRPQDTLA RVAGDEFAVI LLSEREPDRI LSFAEMIRRA IATPVTYADR EVFLTVSIGI
ALHEAAPGAG QGAQPRREEV FKNAEMAMIQ AKRGGGDRIE VFRANMRLER SDRLMLEADL
RKALERNEIK VLFQPIVRLE DRTVAGFETL LRWDHPKLGR IPPSTFLPVA EETGVIVPLG
NFAIERTALE LAAWQRSLDV EPPIFASVNV SSRQLLRHDL LHDVKTVIAR TGVLPGSLKL
EMAEGLVMEN PEYAAQMLTR IHDLGAGLIL DDFGTGYSAI SYLQRFPFDT IKIDQSFVRQ
LGQGRTAMLR SVLRMGQELG LATIAEGAES EEDAQGLQEL GCDYAQGAAF GEPMTVLQAR
QLVGAAPEAA