| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_1449 |
|---|
| Symbol | |
|---|
| ID | 6313869 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | - |
|---|
| Start bp | 1562696 |
|---|
| End bp | 1565629 |
|---|
| Gene Length | 2934 bp |
|---|
| Protein Length | 977 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 642650175 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001924151 |
|---|
| Protein GI | 188580706 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.416631 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCCGGGC ACGACCTGTG CGATCCCGGC GCGATGACCG AATCCCTCCC GTTTCTGGCC
GGCGGCGGCG AGGCCGCCCG CATGATCGCC GAGCGCGATT GGTCGGATCA CCCGCTCGGG
CTCCCGCAGA CCTGGCCCGA GTCGCTGCGC ACGGCGCTGA GCCTCATCCT GAACTCGCCC
GAGAGCATGA TCCTGGCCTG GGGACCGGAC CTGCACTTCT TCTTCAACGA CACCTACTTC
CCGCTGCTCG GGCCGCGCCT GTCCTGGGCC ATGGGCGAGC GCTTCGACCG GGTCTGGGCC
GACGGCTGGG ACCAGGCCAA GCCGATCATC GACGACGCCT TCGCCGGGAA GAGCCGCCGC
TTCGAGGATC TGCCGTGGAA GCTCGCCACC GATCGGGGCG AGGCCGAGAC CTGGTGGAGC
TTCTCCTACT CGCGGGTGCT CGACGGCGAG GGCCGCATCG CCGGCCTGTT CATCTTCACC
AACGAGACGA CCAAGCGCGT CCGCACCGAG ACCCTGCAGC GGGAGAGCGA GGCGGCCCTG
CGCCGCAGCG AATCCCTGCT CTCGGCGACG CTGGAGCGGC TTCCGGTCGG CGTGATCATC
GCCGACGCGG ACGGGCGGAT CGTGCGCGAC AACGCCGCCA ACCGCGAGAT CTGGGGCATC
CCGCCGGAAA CCGCGAGCTG GGAGGGTTAC GCCGACTGGG TCGGCTACTG GCCGGAAACC
GGTGAGCGCC TGCGCGCCGA GGAATGGGGC ATGGCCCGCG CCCTGCTGCA CGGCGAGACC
GTGCGCGGCG AACTCGTGGA GATCGAGCGC TTCGACGGCG GCGGGCGGCG GCTGTTCCTC
AACAACGCCG CGCCGATCCG CGACCGCGCG GGCACCATCG TCGGCGGCGT CGTGGCCGAA
CTCGATGTGA CCGAGCGGAT CGAGGTCGAG CGGCGGCTGC GGGAGAGCGA GGCGCTGGCC
CGGGTCAATG CCGAGCGGGT TCAGCTCGCA CTCTCGGCGG GCGCGATCGT CGGCACGTGG
TTCTGGGACC TGCCCACCGA CCGCTTCACC GTGGACGAGG CCTTTGCCCG CACCTTCGGC
CTCGATCCGG CGCTCGGCCG CGAGGGCCTG AGCCTCGCTC AGGTGGTCGA GACGGTCCAT
CCCGACGACA AGGCCGGGCT GGCGCAGGCG ATCAACGCCG CCATCGCCCG CGGCGGCGCC
TACGCCCACC AGTACCGGGT GCGGCAGGCG GACGGGCGCT ATTACTGGAT CGAGGCCAAC
GGCCGGGTCG ATCACGCGCC CGACGGCACG CCGCTGAGCT TCCCCGGCGT CCTGATCGAC
GTGGAGGAGC GCCGCGCCGT CGCGGAAGAG CGCGACCGGG CCATCGTGCT CCTGCGCCGG
CTCAACGAGA CCCTGGAGGA GCAGGTCGCC GCGCGCACCG CCGAGCGCGA CCAGATCTGG
CAGGCCTCCA GCGACCTCCT GGCCGTGGCC GATCTCGATG GCCGCTTCGT CAGCCTCAAC
CCGGCCTGGA GCGCCACGCT GGGCTGGAGC GAGGCCGAGC TCAAGGCCGC CCCCTTCCTC
GATTTCGTCC ATCCCGAGGA TCGGGAGCGG ACGCTCGCCG CCGCCGCCGA CCTCGCCCGC
GGCGAGATGC GGCTCGGCTT CGAGAACCGC TACCGCACCC GCGACGGCGG CTACCGCTGG
TTCTCGTGGA ACACCGTGCC GCGCGACGGC CTCATCTACG CCTCGGTGCG CGACGTCACC
GCGATCCGGG AGCAGGCGCG GGCGCTGGCC GAGGCCGAGG AGGCGCTGCG TCAGAGCCAG
AAGATGGAGG CGGTGGGCCA GCTCACCGGC GGGCTCGCCC ACGACTTCAA CAACCTGCTC
GCCGGCATCT CGGGCAGCCT GGAGCTGATG CAGACACGGA TTGCCCAAGG CCGGCTCAAG
GACGTCGACC GCTACATGGG CGCCGCGCAA GGGGCGGCCA AGCGCGCCGC GTCGCTGACC
CACCGCCTGC TCGCCTTCTC ACGACGCCAG ACCCTCGACC CGCGGCCCAC CGACGTGAAC
CGGCTGGTGA TGGGGATGGA GGATCTGATC CGGCGCACGG TCGGCCCCAC GGTCACCATC
GAGGTGGTGG GCGCGGCCGG TCTCTGGCCC TCCCTGGTCG ATCCGCCCCA GCTCGAGAAC
GCGCTGCTGA ACCTCTGCAT CAACGCCCGC GATGCGATGC CGGAGGGCGG GCGCATCACC
ATCGAGACCG CCAACAAGTG GCTCGACGCG CACGCCGCGC GCCAGCACGA GGTTCCGCCC
GGCCAGTACC TGTCTCTATG CGTGACCGAC ACCGGCACCG GCATGAGCCC GGACGTGCGG
GCCAAGGCGT TCGACCCGTT CTTCACCACG AAGCCCACCG GCCAGGGGAC GGGGCTCGGC
CTGTCGATGA TCTACGGCTT TGCCAAGCAG ACGGGCGGGC AGGTGCGGAT CTATTCCGAA
CTCGGTCAGG GTACGACGGT CTGCATCTAC CTGCCCCGCT ATCACGGCGA GGCGCATGAG
CCCGATTCGC TCGGGACGCT GGTGGACGCG CCCCGCGCCG AACGGGGCGA GACGGTGCTC
GTGGTCGATG ACGAGCCGAC CGTGCGGATG CTGGTGACCG AGGTGCTGGA AGACCTCGGC
TACACCGCGA TCGAGGCCGC CGACAGCGCG TCGGGCCTGA AGGTGCTGCA ATCGGACGTC
CGCATCGACC TGCTGATTTC CGATGTCGGG CTCCCCGGCG GCATGAACGG CCGCCAGATG
GCCGATGCGG CCCGGGTGTC GCGGCCCGAC CTCAAGGTGC TGTTCATCAC CGGCTACGCC
GAGAACGCGG CGGTGGGCAA CGGCCATCTG GAGCCCGGCA TGGCGGTGCT GACCAAGCCC
TTCGTGGTCG AGACTCTGGG CCTGCGCATC CGGGAGATCA TTTCGCGCGG GTAG
|
|---|
| Protein sequence | MAGHDLCDPG AMTESLPFLA GGGEAARMIA ERDWSDHPLG LPQTWPESLR TALSLILNSP
ESMILAWGPD LHFFFNDTYF PLLGPRLSWA MGERFDRVWA DGWDQAKPII DDAFAGKSRR
FEDLPWKLAT DRGEAETWWS FSYSRVLDGE GRIAGLFIFT NETTKRVRTE TLQRESEAAL
RRSESLLSAT LERLPVGVII ADADGRIVRD NAANREIWGI PPETASWEGY ADWVGYWPET
GERLRAEEWG MARALLHGET VRGELVEIER FDGGGRRLFL NNAAPIRDRA GTIVGGVVAE
LDVTERIEVE RRLRESEALA RVNAERVQLA LSAGAIVGTW FWDLPTDRFT VDEAFARTFG
LDPALGREGL SLAQVVETVH PDDKAGLAQA INAAIARGGA YAHQYRVRQA DGRYYWIEAN
GRVDHAPDGT PLSFPGVLID VEERRAVAEE RDRAIVLLRR LNETLEEQVA ARTAERDQIW
QASSDLLAVA DLDGRFVSLN PAWSATLGWS EAELKAAPFL DFVHPEDRER TLAAAADLAR
GEMRLGFENR YRTRDGGYRW FSWNTVPRDG LIYASVRDVT AIREQARALA EAEEALRQSQ
KMEAVGQLTG GLAHDFNNLL AGISGSLELM QTRIAQGRLK DVDRYMGAAQ GAAKRAASLT
HRLLAFSRRQ TLDPRPTDVN RLVMGMEDLI RRTVGPTVTI EVVGAAGLWP SLVDPPQLEN
ALLNLCINAR DAMPEGGRIT IETANKWLDA HAARQHEVPP GQYLSLCVTD TGTGMSPDVR
AKAFDPFFTT KPTGQGTGLG LSMIYGFAKQ TGGQVRIYSE LGQGTTVCIY LPRYHGEAHE
PDSLGTLVDA PRAERGETVL VVDDEPTVRM LVTEVLEDLG YTAIEAADSA SGLKVLQSDV
RIDLLISDVG LPGGMNGRQM ADAARVSRPD LKVLFITGYA ENAAVGNGHL EPGMAVLTKP
FVVETLGLRI REIISRG
|
|---|
| |