| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_0141 |
|---|
| Symbol | |
|---|
| ID | 6311250 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | + |
|---|
| Start bp | 141454 |
|---|
| End bp | 143841 |
|---|
| Gene Length | 2388 bp |
|---|
| Protein Length | 795 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 642648851 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_001922868 |
|---|
| Protein GI | 188579423 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0947657 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCACCG TCGTCGGTTG TCTGGTCCAA TCCCACGACC TCCGCCTCGT CGCCCTCGCG
GCCGCCACCT GCGCGCTCGC CGCGCTCACC ACGGTCTGCA TCGTCAGCCA CGCCCGCAGG
GCGGAGGGCT GGGCGCAAGG CGGCTGGCTC GCCGTCGCGG CGGCGGCGGG CGGCTCGGGC
ATCTGGGCGA CCCACTTTAT CGCCATGCTC GCCTTCGCGC CCGGCGTGCC GAGCGGCTAC
GATGTCGTTC TCACCGGCTT CTCGCTGGTC ATCGCCGTCG CGCTCGCCGG CTCCGGCCTC
TCGCTCGCCG TCCTCGTCGG CGGGCGCGCC GCGGCCTGGG CCGGCGGCGC GGTCCTCGGC
CTCGGCATCG CGGCGATGCA CTACACCGGA ATGGCCGCCT ACGATGTCGC CGGCCAGAAG
GCGTGGGACC CGACCACGGT CGGCGTCTCG CTCGCCCTGG GAGGCATCCT CGGCGGCGCG
GCGCTCGCGG CCCAGGTCGG CGCCCGCGGG CTCGCCCGCC AGTTGCCCGC CGCCCTCCTG
CTGCTGCTGG CCATCTGCAG CCACCACTTC ACTGCGATGG GCGCCGTCAC CGTCACGCCC
GACCCGACGC TCGCGGTGTC GGCATCCGCC GTCCCGAATG CTTGGCTTGC GGTGGCCGTG
GCGCTCGCGA GCTTCGCCAT CCTGCTGCTG GCCGGCGCCG CGCACGCCCT CGACGTGCGT
GACCGTCGTC ACGCCAAGCT GGAGGCGGAG CGCCTGCACA GCCTCGCCAA CGCCGCCGTC
GAGGGGCTCG TCGTCTGCAC CGGCGACACC GTGGTGAGCG CCAACCGGAG CTTCGCCAAG
CTCGTCGGCC TGCCGCAGGG CGCGCTCGTG GGGACGGCCC TGTCGGCGTA CCTGCCGGGC
GACGCGGCCC GGCTCGCCCT GGCCGGCCAG CCCGACCGCC CGGTCGAGGC CGAGCTCCGC
CAGGCCGACG GCACGCTCGT GCCGGTCGAG GTCATCATGC AGCCGGTGGA GCACGCCGGC
CGTCCGCACT ACGCGGTGGC CGTGCGCGAC CTCCGCGCCC GGCGCCAGGC AGAGAGCCAG
ATCCAGTTCC TCGCCCACCA TGATGCCCCC ACGGGACTGG CCAACCGCGC GAGCTTCGGC
AAGCGCCTCG ACCAGGAGAT GCGCGCCGCC GACGCGGGCG GGCGCAAGCT CGCGGTGCTG
TGCCTCGACC TCGACCGTTT CAAGGAGGTC AACGACCTGT TCGGCCACGC CGCCGGCGAC
GCCATGCTGG AGAGCGTCGC CCGCATCGTC TCGGCCGAAC TCGACGACGC GCAGATGGTG
GCCCGCCTGG GCAGCGACGA GTTCGCGGTG CTGGCGCCCT GCGACGGGCC CTCCGAGGCC
GGCCGCCTCG CCGAGCGCAT CCTGGAGGCG CTGCGCGCAG GGAAGGCGGG GGGCAACGGC
CCGCAGGTCG CCACCAGCAT CGGCATCGCC CTGTACCCGG ACGACGCGCA GGAGCGGGCC
GCCCTCCTCA GCTACGCCGA CACCGCCCTC TACCGCGCCA AGTCGGAAGA GCGCGGCACC
TACCGCTTCT TCGAGGCGAA GATGGGCGTT GAGGTGCGCG AGCGCCGACT GCTGGAGCAC
GACCTGCGCC ATGCCGTGGC CCGCGGCGAG ATGCACCTCG TCTACCAGCC CCAGACCGAC
GTCGGCACGG GCGCCGTCAT CGGCTTCGAG GCGCTGCTGC GCTGGAAGCA CCCGGAGCGG
GGCTACGTCT CGCCCGCCCT GTTCATCCCC ATCGCCGAGG AGAGCGACGC CATCCTGCAG
ATCGGCGAGT GGGTGCTGCG CGAGGCCTGC CGGGAGGCCG CGAGCTGGAC GCAGCCCCTG
TCCATCGCGG TCAACGTCTC GGCGGTGCAG ATCCACAGCC CCCACTTCGT CGGCCTCGTG
CACGAGGTGC TGCTCAGGAC CGGGCTGGCC CCGCACCGGC TTGAGGTCGA GGTCACCGAG
ACGGCGCTGA TCAGCGACCC GAACCGGGCG CTCCTGACCC TCCGGCAGTT GAAATCGCTC
GGCCTGCGCG TCGCCATGGA CGACTTCGGC ACCGGCTACT CGTCCCTGTC GAACCTGCGC
TCGTTCCCGT TCGACAAGAT CAAGGTCGAC GGCTCGTTCG TGCGCTCCGT CGACAGCAAC
GAGCAGACGG CGGCCATCGT GCGCTCGGTC CTGGGCCTCG GCCGCGGCCT CGGGCTGCCG
GTCCTGGCCG AGGGCGTCGA GACGGAGGCC GAGCTCGGCT TCCTCGCCGC CGAGCAGTGC
CACGCCGCGC AGGGCTACCT GATGGGCCGC CCGTCACCCA TCGCGCAGTT CGCCAGGCAT
ACGCATGGCA CGATTCCCGT CACCTCCGAT GACCGCAAAC GCGCCTGA
|
|---|
| Protein sequence | MLTVVGCLVQ SHDLRLVALA AATCALAALT TVCIVSHARR AEGWAQGGWL AVAAAAGGSG
IWATHFIAML AFAPGVPSGY DVVLTGFSLV IAVALAGSGL SLAVLVGGRA AAWAGGAVLG
LGIAAMHYTG MAAYDVAGQK AWDPTTVGVS LALGGILGGA ALAAQVGARG LARQLPAALL
LLLAICSHHF TAMGAVTVTP DPTLAVSASA VPNAWLAVAV ALASFAILLL AGAAHALDVR
DRRHAKLEAE RLHSLANAAV EGLVVCTGDT VVSANRSFAK LVGLPQGALV GTALSAYLPG
DAARLALAGQ PDRPVEAELR QADGTLVPVE VIMQPVEHAG RPHYAVAVRD LRARRQAESQ
IQFLAHHDAP TGLANRASFG KRLDQEMRAA DAGGRKLAVL CLDLDRFKEV NDLFGHAAGD
AMLESVARIV SAELDDAQMV ARLGSDEFAV LAPCDGPSEA GRLAERILEA LRAGKAGGNG
PQVATSIGIA LYPDDAQERA ALLSYADTAL YRAKSEERGT YRFFEAKMGV EVRERRLLEH
DLRHAVARGE MHLVYQPQTD VGTGAVIGFE ALLRWKHPER GYVSPALFIP IAEESDAILQ
IGEWVLREAC REAASWTQPL SIAVNVSAVQ IHSPHFVGLV HEVLLRTGLA PHRLEVEVTE
TALISDPNRA LLTLRQLKSL GLRVAMDDFG TGYSSLSNLR SFPFDKIKVD GSFVRSVDSN
EQTAAIVRSV LGLGRGLGLP VLAEGVETEA ELGFLAAEQC HAAQGYLMGR PSPIAQFARH
THGTIPVTSD DRKRA
|
|---|
| |