| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_B0401 |
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| Symbol | |
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| ID | 4788029 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylibium petroleiphilum PM1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008826 |
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| Strand | + |
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| Start bp | 353956 |
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| End bp | 356511 |
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| Gene Length | 2556 bp |
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| Protein Length | 851 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640092833 |
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| Product | DNA topoisomerase |
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| Protein accession | YP_001023411 |
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| Protein GI | 124262941 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0152197 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0000578583 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGGAAAAC TCCTGATCAT TGCCGAGAAG CCCTCTGTCG CTCGCGACAT CGCTGTGGCC
CTCGGCGGCT TTGCCAAGAA CGATCGCTGG CTCGAGAGCA ACGACGCGGT CGTGTCATCG
GCTCTTGGCC ACCTGGTCGA GATCTACGCG CCCGAGGCGG AGACGACCGG TCGTGACCTC
TCCAGTCTGC CCGTGATCCC CGCTGCCTTC GCGCTGCGCG AGATCCCTGG GCGTGAAGAC
CAGTTCCGGC TGCTGAGCAA GCTGCTCAAG CGGCCCGACA TCGACGCCAT CGTCAACGCC
TGCGACGCGG GGCGCGAGGG CGAGCTGATC TTCCGCCTGA TCTATGAGCA CGCGGGCTGC
CGCAAACCGA TCAAGAGGAT GTGGCTGCAG TCGATGACCG CGGACGCGAT CCGCGATGCC
TTCCGCGGCA TGCGGCCGGG GAAGGACTTC GACGCGTTGG CCGCAGCTGC GCGCAGCCGT
AGCGAGGCCG ACTGGATCGT TGGCATCAAC GGCTCGCGCG GCATCACTCG CCTGCGCGAA
CGCCAGACTT CCGGGCCCGG GTCAATGAAC GCCGGACGCG TGCAGACGCC CACGCTGGCG
ATCGTCGTGG ACCTGGAGAA CCGCCTGCGC AACTTCGTGG CGAAGGACTA CTGGGAAGTG
CATGGCACCT TCTCGGTGGC CGCCGGCACC TACATCGGCC GCTGGTTCGA CCCGAACGCG
AAGACCAACG GCTCGGACGA TCCGCCGGAG CGGCTGTGGG ACCGCGCGCG CGCACAGGCC
ATCGTGGCCA AGTGCGCCGG CCAGGACCCG AGCGACGTTC AGGAGGAATC GAAGCCCTCG
CTGTCGCATC CGCCCAAGCT CTACGACCTG ACCTCGCTGC AGCGCGAGGC GAACAAGCGC
TTCGGTCTGT CTGCCAAGCG CACGCTTGAC ATCGCGCAGG CCCTGTACGA GAAGCACAAG
GTCACCACCT ACCCGCGGAC GAACTCGTCG GCCTTGCCCG AGGACTACGT GCCCAAGGCG
ATCGGCACGA TGCGCGACTT CGCCGGCACG CCCTTCGAGA AGCACGCCAC GAAGGCGCTC
GACCAGGGCT GGGTGCGGCC CGACAAGCGC ATCTTCAACA ACGCCAAGAT CACTGACCAC
TTCGCGATCA TCCCCACCGG CAAGAAGCCC GAAGGACTCA GCGCCGAGGA GGCCAAGGTC
TACGAGATGG TGGCCAAGCG ATTCATTGCC GCCTTCTACC CGCCGGCCGA GTACCGCGCC
ACGACGCGCA TCACGACCGT GGCCAGCGAG CTGTTCAAGT CGACCGGCCG CGTACTGATC
CACCAGGGCT GGCTCGAGGT CTACGGCGCC AGCCTGGACG ATGACGACAA GACGCCGGCG
CTGACCGAGT TCGTGCCGGG CGAGGCCGTC AAGACCGACA AGATCGAGCT CAAGACGCTC
AAGACCAAGC CGCCGGTGCG CTTCACGGAA GCCACGCTGC TGGGCGCGAT GGAGAACGCC
GGCAAGCTGG TCGACGAGGA CGACCTGCGC GACGCCATGA AGGAATGCGG CCTGGGCACG
CCGGCCACGC GCGCGGCGAT CATCGAAGGC CTGCTCGCCG ACAAGGACGG CGCCGGACGC
GCCAAGGAGC CCTACCTGAC TCGGGAGGGC AAGCAGCTCG TCCCGTCGCA GAAGGGCATG
GACCTGATCG CCTTCCTGAA CGCCAACGGC GTGCAGTCTC TGACGTCGCC GAAGATGACC
GGCGACTGGG AGCAGAAGCT GCTCAAGATG GAGCAGGGTG CCTATGCGCG CGACGCCTTC
ATGGCGGAGA TCTCCACGCT GACCCGCGAC CTGATCGACG TCGTGCGCAA ACAGGCGGCG
CTGGTCAAGC TGCCGACCAC GAACACGCCG TGCCCCAAGT GCGGCGGCGC GCTCGGCGTC
GGCCCCCGGG TCATCGAGTG CCAGGCCGCC TGCGGCTTCA CGCTGTGGCG CACGATCGCA
GACCGCGCGC TGTCGATGCC GGAGGTCGAG AAGCTGCTGG CCGAGCGCGA GCTGGGCCCT
CTCGAGGGCT TCCTGAGCCG ATCGAAGAAG CGCTTCACCG CTGGCCTGCG CATGAACGAC
GAGTTCAAGA TCGAGTTCTC GTTCGACAAC GCGGCCGTCA CTACCGATGC CAGCGGGAAC
GAGGTGACAT GCCCGAAGTG CAGCCAGAGC ATGCGCCGCA TCAGCGGCAA GAACGGCTAC
TTCTGGTCCT GCTCCGACCG CGAGTCCTGC AAGACGACCC TGGACGACGT CGACGGCAAC
CCGGCCGAGC CGCCGAAGAC CAAGCCGTGC CCCAGCTGTC AGCGGCCCAT GTTCCTGCGC
AGCGGCGGCC GCGGGCCCTT CTGGGGCTGC AGCGGCTACC GCGACGGCGA CTGCAAGACG
ATCGTTGAAG CGGAGGAGGG CGAGGTCGCG CCCCCGCCCC GCGGCGGCGG CAAGGCCAAG
CCTGGCGCGA AGGCGCGCGG TAAGCCCGCC GGAGCCAAGA CCACCGGAGC ACGTCGCCCT
GCGGCCGGCT CTTCCCCGAA GGGCCACTTC CTCTGA
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| Protein sequence | MGKLLIIAEK PSVARDIAVA LGGFAKNDRW LESNDAVVSS ALGHLVEIYA PEAETTGRDL
SSLPVIPAAF ALREIPGRED QFRLLSKLLK RPDIDAIVNA CDAGREGELI FRLIYEHAGC
RKPIKRMWLQ SMTADAIRDA FRGMRPGKDF DALAAAARSR SEADWIVGIN GSRGITRLRE
RQTSGPGSMN AGRVQTPTLA IVVDLENRLR NFVAKDYWEV HGTFSVAAGT YIGRWFDPNA
KTNGSDDPPE RLWDRARAQA IVAKCAGQDP SDVQEESKPS LSHPPKLYDL TSLQREANKR
FGLSAKRTLD IAQALYEKHK VTTYPRTNSS ALPEDYVPKA IGTMRDFAGT PFEKHATKAL
DQGWVRPDKR IFNNAKITDH FAIIPTGKKP EGLSAEEAKV YEMVAKRFIA AFYPPAEYRA
TTRITTVASE LFKSTGRVLI HQGWLEVYGA SLDDDDKTPA LTEFVPGEAV KTDKIELKTL
KTKPPVRFTE ATLLGAMENA GKLVDEDDLR DAMKECGLGT PATRAAIIEG LLADKDGAGR
AKEPYLTREG KQLVPSQKGM DLIAFLNANG VQSLTSPKMT GDWEQKLLKM EQGAYARDAF
MAEISTLTRD LIDVVRKQAA LVKLPTTNTP CPKCGGALGV GPRVIECQAA CGFTLWRTIA
DRALSMPEVE KLLAERELGP LEGFLSRSKK RFTAGLRMND EFKIEFSFDN AAVTTDASGN
EVTCPKCSQS MRRISGKNGY FWSCSDRESC KTTLDDVDGN PAEPPKTKPC PSCQRPMFLR
SGGRGPFWGC SGYRDGDCKT IVEAEEGEVA PPPRGGGKAK PGAKARGKPA GAKTTGARRP
AAGSSPKGHF L
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