| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_B0350 |
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| Symbol | trbC |
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| ID | 4787978 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylibium petroleiphilum PM1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008826 |
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| Strand | + |
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| Start bp | 302077 |
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| End bp | 302763 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640092782 |
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| Product | sex pilus assembly and mating pair formation protein |
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| Protein accession | YP_001023360 |
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| Protein GI | 124262890 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02742] type-F conjugative transfer system pilin assembly protein TrbC |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.448166 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCGTCGG ATCAGCAGAT CCGGGCGGTG ATGGAGCAGC AGCGCAAGGG GCTCAAGGAC
CAGGGCGTCT TGGGGGCCGG CGCCGCCTCT CGGGTGCAGC CTGTCGCGCC CGGCACCTAC
AAGACCGAGG TGTTCCCCGG CACGCTGCCG GACGCCGCCG GCAAGAAGCG CGACACGCCA
ACCGGCGACA ACCTCGAGGA GCTGGTCAGC AAGTACAACA GCGCACTGCG TGGCGACGCG
CCGAAGGCCG TGTCAGCTCG CGGTGACCTG GTGGTCTTCG TCTCGCTCTC GATGCCGAAG
GAAGTGCTGA CCGAGTTGTC GCGCCAGGCC AAGGAGATGG GTGCGATGCT GGTCCTTCGC
GGCTTCAAGG ACGGCAGCGT CGACAAGACG CGTATTGCAG CCCAGGAGGT CAACCCGTCC
GGCGCGCCAT GGGAGATCCA CCCGGACCTG TTCAAGGCGT TCAAGGTGAA CAAGGTGCCG
ACGATTGTCC TGGCCAACGC GGCGTCAGGC TCGCTCGACG AGGAGGGCTG CGCCCCGGAG
GCGACCTACG GCTCCGTCAG CGGCAACGTC TCGCTCGAGC TCGCGCTGAA CACGCTGCGC
CTGCGCGGCC GTCCGGACAT CGCCAAGCTC GCCGAGTTGC GCCTGGCCGA TCTGCGCTCG
CGCAACGCGC CTGCGAAGCT GCGCTGA
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| Protein sequence | MPSDQQIRAV MEQQRKGLKD QGVLGAGAAS RVQPVAPGTY KTEVFPGTLP DAAGKKRDTP
TGDNLEELVS KYNSALRGDA PKAVSARGDL VVFVSLSMPK EVLTELSRQA KEMGAMLVLR
GFKDGSVDKT RIAAQEVNPS GAPWEIHPDL FKAFKVNKVP TIVLANAASG SLDEEGCAPE
ATYGSVSGNV SLELALNTLR LRGRPDIAKL AELRLADLRS RNAPAKLR
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