Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mpe_B0011 |
Symbol | ligD |
ID | 4787614 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylibium petroleiphilum PM1 |
Kingdom | Bacteria |
Replicon accession | NC_008826 |
Strand | + |
Start bp | 7816 |
End bp | 10410 |
Gene Length | 2595 bp |
Protein Length | 864 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640092422 |
Product | ATP-dependent DNA ligase |
Protein accession | YP_001023027 |
Protein GI | 124262557 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase [COG3285] Predicted eukaryotic-type DNA primase |
TIGRFAM ID | [TIGR02776] DNA ligase D [TIGR02777] DNA ligase D, 3'-phosphoesterase domain [TIGR02778] DNA polymerase LigD, polymerase domain [TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.0339968 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGGCAGGA CGGCACCCTC GACGCAGGCC AACGCCGACA CGCCGCTGTC GCGCTACAAC GCCAAGCGCA ACTTCAAGGT CACCTCTGAG CCGGCCGGCG TACCGGCCAA GCGCTCAGGC AAATCCAAGG CGCTGTGCTT CGTCATCCAA AAGCACTGGG CCAGCCGGCT CCACTACGAC TTCCGCCTCG AGCTCGACGG CGTGATGCTG AGCTGGGCAG TGCCAAAGGG GCCCTCCTAC GACCCGGCCT TGAAGCAGAT GGCCATCCAC GTCGAGGACC ACCCGATCAG CTACAACACC TTCGAGGGCA CGATCCCGAA GGGCCAGTAC GGGGCCGGCA CGGTCATCAT CTGGGACCGC GGCACCTGGG AGCCGGAGGG CGACCCCCGG GAGGGGATGG CCAAGGGCAA GCTGATCTTC AAGCTCCACG GCCAGAAGCT GGCCGGCCTC TGGGAGCTGG TGCGCATCTC CAAGCCTGGC GAGGTGAAGC AGGAGCAATG GCTGCTGCTC AAGAAGCGGG GCGACGCCTG GGCCCGCCCG ACGTCGGAGT ACGACGTCAT CTCGGCCCTG CCGGACAGCG TGGTGGAGAA GCCGCTCGGG CCAGTCGAAG AGCGGGAACA GCGGGCTGGC GGAACGGCGG CGGGAACGCC AGGGCCGAGC GGCGAAGCGG ACCTGCAGCT TGCGGTCCAG GCGCCCCTTC CGGCCAAGCT GGCGCCACAG CTGGCCACCC TGGCCTCGGC CGTTCCCAGC GGCGGCTCCT GGATCGTCGA GACCAAGTTC GACGGCTACC GGATGCTTGC TCGCGTCGAC GGTGACGATG TCCGGCTCTT CACCCGCAAC GGCAACGACT GGACGTCCAA GCTCAAGACC GTCGCCGCGG CCGTGAAGGA CCTCGGACTT GACTCGGCCT GGCTCGATGG CGAAATCGTC GTCATCAACC AGGCTGGCGT GCCGGACTTC AACCGCCTCC AGAACGCCAT CGACAACAGT CGCTCGAAGG ACATCAGCTT CTTCGTCTTC GACGTCCCCT TCTTGGGCGG CATGGACCTG AGGAAGGTGC CGGTGGCCAG CCGCCGCCAG GTGCTCAATG AGCTCTTCGA GCAGCGCCAG AGCGAGGTCG TACGGTTCAG CGAGGCCTTC GACGTGCCGC CGGCGCACAT GCTCGAGGCC GCCTGCAAGA TGGGGCTCGA AGGCGTGATG GTCAAGCGCG CCGACGCGCC CTACGTCTCC TCGCGGACGG ACACCTGGCT GAAGCTCAAG TGCCAACAGC GGCAGGAGTT CATCGTCGTA GGCTTCACCG ACCGCGCCGG CGCGCCGACC GAGGTCGGCG GGCTACTCCT CGGCTACCAC GAGGACGGGA AGCTGCGCTA CGCCGGCTCC GTCGGTACCG GCTGGAACTC AGCCACCGGC CGGGAGCTGC GGTCAACGTT GGCCAAGCTC CAGGTCGAGA AGCCGGCGCT CGAGGCGGGT GCCGTGAAGC CCGGCCGCTG GTCCAAGCGC CCCGCCGGCG TCGAGCGCTG GGTCAAGCCC ACCATGGTGG TCGAGGTGGC CTTCTCTGAG TGGACGCCCG ACGGGCACGT CCGGCATCCC ACCTTCCGTG GGGTCCGGAC GGACAAGCCG GCAACGCAGA TCACCCGGGA GAAGGCGGAG CGGCCCGAGG GCCCGGTGAC CGAGACGGCG GCCGCCGTGG CAGGGAAGCC TAGGACGAGC GTCAAGGTGA CGAATCCGGA CCGGGTCATT GACCCGTCGA CCGGCTTCAA AAAAGTCGAC CTGGTGCGCT ACTACGAGTC CATCGCCGAC TGGATGCTGC CGCATCTGAA AGACCGGCCG GTCTCACTCG TCCGAGCGCC CGAGGGCATC ACCGGCGAGC AGTTCTTCCA GAAGCATCCG GAGACCAAGA TGCCGGGCAT GACGGAGCTG GACCCAGCTC TGTGGCCCGG CCACTCTTCG CTGCTCGCCG TCGGCAGCGC CGAGGCCCTG GTGTCAGCGG CTCAGATGAA CGTGGTCGAG TTCCACACCT GGAACTCCAC GATCAAGCGC ATCAACGAGC CCGACCGGGT CATCTTCGAC CTCGACCCAG GAGAAGGCGT CAGCTGGGCT CACCTGCAGG AGGCCGCAGT GCTCATGCAC ACGCTGCTGA CGGAGCTCGG CCTCGAGGCC TGGCTGAAGA CAAGCGGCGG TAAGGGCCTC CACGTCGTCG TGCCGCTGGC GCCGAAGCTG GACTACGACG CCGTGAAGGG CTTCTCCCAG GCGGCGGTGC AGCACATGGC GAAAACCATC CCGCAGCGCT TCGTCGCCAA GTCCGGTGGC TCCAACCGAG TCGGACGCAT CTTCATCGAC TACCTGCGCA ACGGTCACGG GCAGACGACG GCATCCGCGT TCTCGGCCCG GGTTCGGCCA GGCATGGGAG TGTCGATGCC GGTGAGCTGG GAGCAGCTGC GCGAGCTCAA GAGCGGGTCG CAGTGGAGCA TCGCGACGGC TCGGGAGTAC CTGTCGTTCC AGAAGAGCGA CCCGTGGGCC GCGTACTGGA CGAGCAAGCA GACGTTGACC AAGGCAATGA GACTTCTCGG CTACGCCCCC AAGAAGGCGG CATAG
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Protein sequence | MGRTAPSTQA NADTPLSRYN AKRNFKVTSE PAGVPAKRSG KSKALCFVIQ KHWASRLHYD FRLELDGVML SWAVPKGPSY DPALKQMAIH VEDHPISYNT FEGTIPKGQY GAGTVIIWDR GTWEPEGDPR EGMAKGKLIF KLHGQKLAGL WELVRISKPG EVKQEQWLLL KKRGDAWARP TSEYDVISAL PDSVVEKPLG PVEEREQRAG GTAAGTPGPS GEADLQLAVQ APLPAKLAPQ LATLASAVPS GGSWIVETKF DGYRMLARVD GDDVRLFTRN GNDWTSKLKT VAAAVKDLGL DSAWLDGEIV VINQAGVPDF NRLQNAIDNS RSKDISFFVF DVPFLGGMDL RKVPVASRRQ VLNELFEQRQ SEVVRFSEAF DVPPAHMLEA ACKMGLEGVM VKRADAPYVS SRTDTWLKLK CQQRQEFIVV GFTDRAGAPT EVGGLLLGYH EDGKLRYAGS VGTGWNSATG RELRSTLAKL QVEKPALEAG AVKPGRWSKR PAGVERWVKP TMVVEVAFSE WTPDGHVRHP TFRGVRTDKP ATQITREKAE RPEGPVTETA AAVAGKPRTS VKVTNPDRVI DPSTGFKKVD LVRYYESIAD WMLPHLKDRP VSLVRAPEGI TGEQFFQKHP ETKMPGMTEL DPALWPGHSS LLAVGSAEAL VSAAQMNVVE FHTWNSTIKR INEPDRVIFD LDPGEGVSWA HLQEAAVLMH TLLTELGLEA WLKTSGGKGL HVVVPLAPKL DYDAVKGFSQ AAVQHMAKTI PQRFVAKSGG SNRVGRIFID YLRNGHGQTT ASAFSARVRP GMGVSMPVSW EQLRELKSGS QWSIATAREY LSFQKSDPWA AYWTSKQTLT KAMRLLGYAP KKAA
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