Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mpe_A3796 |
Symbol | |
ID | 4785965 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylibium petroleiphilum PM1 |
Kingdom | Bacteria |
Replicon accession | NC_008825 |
Strand | - |
Start bp | 4015370 |
End bp | 4016083 |
Gene Length | 714 bp |
Protein Length | 237 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640092379 |
Product | LuxR family transcriptional regulator |
Protein accession | YP_001022984 |
Protein GI | 124268980 |
COG category | [K] Transcription |
COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00301827 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGCTGCTGG GCAGCTTTCA ATCGGTGCTC GAAGCGCGCA ACCGCGATGA GTTTCGCGGC GAGGTCGTGC GTTTCGCGAA GCGGCTCGGG TTCGAGACGG TGTCGGCCAT CACGGTGGTC GATCACCCGG TGGGCGATAC CGAGTTCGTC GCCATCGACA ATGCGCCCGA CGCCTACAAG GACGCCATCG AGGATCCCAA GGCCGGTCAG CTCGACCCGG TGATGCAGCA TTGCAAGCGG CAGAGTGTGC CGATCATCTG GGACCAGAGC ACCTATGTGT CTGCCGGTCA AGGCAGCATG TGGGAGGCGC AGGCGCGGTT CGGCTTTCGC ACTGGGATCT GCCTGGCGTT GCACATGCCC GAAGGCCGGC ACTTCGTGAT CGGGGTGGAT CGCGACCAGG CCTTGCCGAA GGACCGCGGC GAAGTGACGC GCCTCGTCGC CGACCTGCAG CTGTTCGCGG TGCATGCCCA GGACACGGCG ATGCGGGTGC TGGTGCCGGA GCGCCTGCAG CTCGAGCGGC CGAAACTCAC GCCCCGCGAA CTGGACAGCC TGCGCTGGAC GATGGACGGC AAGACCGCCT GGGAGGTCGG CTCCATCATG GGCATCTCGG AGCGGACGGC GGTGCTGCAC ATCAACAACG CGATGCACAA GCTGGCCTGC ACGAACAAGC ACCAGGCCGT GCTCAAGGCC TTGCGGCTGG GATTGCTCCG CTAG
|
Protein sequence | MLLGSFQSVL EARNRDEFRG EVVRFAKRLG FETVSAITVV DHPVGDTEFV AIDNAPDAYK DAIEDPKAGQ LDPVMQHCKR QSVPIIWDQS TYVSAGQGSM WEAQARFGFR TGICLALHMP EGRHFVIGVD RDQALPKDRG EVTRLVADLQ LFAVHAQDTA MRVLVPERLQ LERPKLTPRE LDSLRWTMDG KTAWEVGSIM GISERTAVLH INNAMHKLAC TNKHQAVLKA LRLGLLR
|
| |