| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A3122 |
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| Symbol | nikA |
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| ID | 4786635 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylibium petroleiphilum PM1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008825 |
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| Strand | - |
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| Start bp | 3322997 |
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| End bp | 3324238 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640091693 |
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| Product | periplasmic-binding protein |
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| Protein accession | YP_001022310 |
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| Protein GI | 124268306 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00833115 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0608186 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACCAAT TAAGTGCATC AAAGTTGTCG TCCCGCAACA GAATAAGCAT AGAACAAGCT
CAGTGCTGGC GGGGGGCGCA ACGGTCTGGT GGAATCGCTC CTCAGTTGGG ACGGCGAGCA
GCTTCGGGTG TCGCACACAG CATCCGAGGT TCCGGCTTCA CCGAAACCAC ATGTTCAACT
CTGGAGATAG TTGCAATGAA AAAATCAGTA CTCGCTCTGG CCGCTCTGGG TGCTTTCGCC
GGTGCCGCTT CGGCGCAATC GTCGGTCACC CTGTACGGCC GTCTGGACAC TGCTGTCACC
TGGACTGACA GCACGATCGC CGAAGACCGC TTCACGCTGA ACAACCACCA GCCGATCGGT
GGTTCGCGCT GGGGCCTGAA GGGCAGCGAA GACCTGGGTG GTGGCCTGAA GGCCAACTTC
ACGCTGGAGT CGGGCTTCAA CTCCGACGAC GGCACTGGTA ATGCCAAGCT ATTCGACCGC
GCCGCCTGGG TGGGCCTGAG CTCGGCCAGC CTCGGCGAAA TCCGCCTCGG TCGTCACGAC
ACGCTGACCC GTCAGTTGAA CCTCGGCTAC GGCTCGGACC TGACCGCTGA AGGCGAAATC
ACGGTCGTGG ACGGTAATTT TGCAGCCGGC ACGGCTCTTG CCCCGACCGG TCGCGTTCTG
TTCCAGAACT TCGGCACCCG CGTCGACAAC TCGGTCGTCT ACCTGTCGCC GAGCTTCGGT
GGCTTCCAGG TGCGCGCGCT GGTCGCCGCT GGCGAAGGCG CCACGGCTCG CCAGCAAGGT
CTGTTGCTGG GTTATGCGGC TGGCCCGATC AAGGCAGGTC TGTCGTACGA AGAGTACGAC
GACGCCCCGG GCGGCGGTGG CAGCGCCTAC AACAAGGTGT TCACCGCGGG CGGCAGCTAC
AACTTCGGCG TCGCGACGCT GGGCCTGGGC TATCAGAAGA CCAGCGACTT CGGCTCGAAC
GCTGGCGAGT CGGTTGTGAT CAATGATGTC GATGCCTACA ACGTCGGCGT GCTCGTGCCG
TTCGGCAGCT TCGAGTTCCG TGCCCAGTAC ACGCACTCGA AGGCTGATCT GGATGCGGGT
GGCAGCAACA AGAACGACAA GTACGGCGCT TCGCTCCGTT ACGCGCTGTC GAAGCGGACC
ACGATCTACA GTGCCTACCT GCACCGCGAG TCGGACAACG ACGACACGTT CAACCTGACT
GGCAAGGACC AGTTCCTGGT CGGTATCGGC CACAACTTCT GA
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| Protein sequence | MHQLSASKLS SRNRISIEQA QCWRGAQRSG GIAPQLGRRA ASGVAHSIRG SGFTETTCST
LEIVAMKKSV LALAALGAFA GAASAQSSVT LYGRLDTAVT WTDSTIAEDR FTLNNHQPIG
GSRWGLKGSE DLGGGLKANF TLESGFNSDD GTGNAKLFDR AAWVGLSSAS LGEIRLGRHD
TLTRQLNLGY GSDLTAEGEI TVVDGNFAAG TALAPTGRVL FQNFGTRVDN SVVYLSPSFG
GFQVRALVAA GEGATARQQG LLLGYAAGPI KAGLSYEEYD DAPGGGGSAY NKVFTAGGSY
NFGVATLGLG YQKTSDFGSN AGESVVINDV DAYNVGVLVP FGSFEFRAQY THSKADLDAG
GSNKNDKYGA SLRYALSKRT TIYSAYLHRE SDNDDTFNLT GKDQFLVGIG HNF
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