| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A3107 |
|---|
| Symbol | |
|---|
| ID | 4786680 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | - |
|---|
| Start bp | 3306727 |
|---|
| End bp | 3307839 |
|---|
| Gene Length | 1113 bp |
|---|
| Protein Length | 370 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640091678 |
|---|
| Product | 3-dehydroquinate synthase |
|---|
| Protein accession | YP_001022295 |
|---|
| Protein GI | 124268291 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0337] 3-dehydroquinate synthetase |
|---|
| TIGRFAM ID | [TIGR01357] 3-dehydroquinate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.117886 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCATCGA TCTCTGTGAC TCCTCTCTCC GGCATCGAGA CCATCGATAT CGCCCTCGGC
GAGCGGAGCT ATCCCATACG CATCGGCTCC GGCTTGCTGC GCGCGCCCGA AAGTTTTGCA
GGCGTCCCGC GCAGCCCGTT GGCCGTCATC GTCAGCAACA CCACGGTGGC GCCGCTCTAT
GCGCAGTCCC TGCGGGACGC TCTGCGCGGG AGGCACGCGC AGGTCGAGCT CATCACGTTG
CCCGACGGCG AAAGCCACAA GGATTGGGCC GCGCTGAACC TGATCTTCGA CGCGCTGCTG
GCCAGAGGCG CCGATCGGAA GACGATCCTC TATGCGCTGG GCGGTGGGGT GGTCGGCGAC
ATGACCGGCT TCGCCGCAGC CAGCTACATG CGCGGGGTGC CCTTCGTTCA GGTCCCCACC
ACGCTGCTGG CGCAGGTCGA TTCCTCCGTG GGTGGCAAGA CGGGTATCAA CCACCCGCGC
GGTAAGAACA TGATCGGCGC GTTCCATCAG CCGGTCTGCG TCGTCGTCGA TCTGGAGACG
CTGAGCACGC TGCCGATGCG GGAGTTGCGC GCCGGCCTGG CCGAAGTCAT CAAGTACGGG
CCGATCGCCG ATGCGAGCTT CCTGGGTTGG GTCGAAGCCA ACCTGGATGC ATTGCTTGCT
CGCGATGTGG CCACCCTGCG CCATGCCGTG CGACGGTCGT GCGAGATCAA GGCGGCCGTC
GTCGGTCAGG ACGAGCGCGA GGCCGGCTTG CGGGCCATTC TCAATTTCGG CCATACCTTC
GGTCATGCGA TCGAGGCAGG TCTGGGTTAC GGAGAGTGGC TCCATGGTGA GGCTGTCGGT
TGCGGCATGG CGATGGCAGC CGAAACCTCG GCGCGACTGG GCCTGCTGCC CGAGGGGGAC
GCGGAGCGCC TGATCCGGCT CATCGATCGT GCGGGTTTGC CGGTGAAGGG GCCGGACCTG
GGGGCGGATC GCTATCTCGA GCTCATGCGC CTCGACAAGA AGGCGGAAGC CGGCGAAATC
AAGTTCGTGC TGCTCGACGC CATCGGGCAT GCCGTGCTGC GCAGCGTGCC GGATGCAACC
TTGCGTCAGG TCCTCGCTTC GCGCTGTACG TGA
|
|---|
| Protein sequence | MSSISVTPLS GIETIDIALG ERSYPIRIGS GLLRAPESFA GVPRSPLAVI VSNTTVAPLY
AQSLRDALRG RHAQVELITL PDGESHKDWA ALNLIFDALL ARGADRKTIL YALGGGVVGD
MTGFAAASYM RGVPFVQVPT TLLAQVDSSV GGKTGINHPR GKNMIGAFHQ PVCVVVDLET
LSTLPMRELR AGLAEVIKYG PIADASFLGW VEANLDALLA RDVATLRHAV RRSCEIKAAV
VGQDEREAGL RAILNFGHTF GHAIEAGLGY GEWLHGEAVG CGMAMAAETS ARLGLLPEGD
AERLIRLIDR AGLPVKGPDL GADRYLELMR LDKKAEAGEI KFVLLDAIGH AVLRSVPDAT
LRQVLASRCT
|
|---|
| |