| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A2805 |
|---|
| Symbol | nikR |
|---|
| ID | 4785055 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | - |
|---|
| Start bp | 2988279 |
|---|
| End bp | 2988749 |
|---|
| Gene Length | 471 bp |
|---|
| Protein Length | 156 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640091376 |
|---|
| Product | nickel responsive regulator |
|---|
| Protein accession | YP_001021994 |
|---|
| Protein GI | 124267990 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0864] Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain |
|---|
| TIGRFAM ID | [TIGR02793] nickel-responsive transcriptional regulator NikR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.20015 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACGCT TCACCATCTC CCTCGACGAC AAGCTCGCGC ACGAATTCGA CCACTGGATC
GCCGACCGCG GCTATGCCAA CCGTTCGGAG GCGGTGCGCG ACCTGCTGCG TGCGGAGATG
GAGCGCACGC GACAGAACAA GGACGAGTCG GTGCACTGCG TGGCCTGCCT GTCGTACATC
TTCAACCACC ACCAGCGCGA ACTCACCGAG CGCATCACCG AGCTACAGCA CGATCACCAC
GATCTTGCGG TGTCGACGAT GCACGCGCAC CTCGATCACG ACCATTGCCT CGAGACCGTG
ATCCTCCGCG GCCCGACGCT GGCGGTGAGG CGCTTCGCCG ACGCGGTGTG CGCCGAGCGC
GGCGTGCACC ACGGCAAGCT CAACCTCATC AGCGTGGAAC TGCACCACAG CCACAAGCAC
GGACGCGGCG CGCACCACGC GGCGCACGTG CATCCGAAGC CGGCATCCTG A
|
|---|
| Protein sequence | MERFTISLDD KLAHEFDHWI ADRGYANRSE AVRDLLRAEM ERTRQNKDES VHCVACLSYI
FNHHQRELTE RITELQHDHH DLAVSTMHAH LDHDHCLETV ILRGPTLAVR RFADAVCAER
GVHHGKLNLI SVELHHSHKH GRGAHHAAHV HPKPAS
|
|---|
| |