| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A2491 |
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| Symbol | |
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| ID | 4784887 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylibium petroleiphilum PM1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008825 |
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| Strand | + |
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| Start bp | 2650948 |
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| End bp | 2653188 |
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| Gene Length | 2241 bp |
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| Protein Length | 746 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640091061 |
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| Product | putative RNA polymerase sigma(sigma-70) factor transcription regulator protein |
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| Protein accession | YP_001021681 |
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| Protein GI | 124267677 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.046137 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.87444 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCGA AGAAGAGCGC TCCCGCCCCT GCGAGCAAGC CATCGAAGAC CGCCGCGCCG
GCGCCGGCCG CCAAGGCCGC AGCCAAGTCG GCCGGCAAGG CCGAGATCGA CCCGAAGAAG
GCCAAGGCGG CTGCCGCCCC GGCCAAAGCC GCGGGGAAGA CGGCCAAAGT CGCCGTGCCC
GAGGCCCCCA AGGGCAAGCC GGGTCGCAAG CCGGCCGCCA AGCAAGCGCT GCCGGTGCTC
GACGAGGACC TGGGCGACAT CGAGGCCGAC CTCGAAGGCG AAGCCAGCGC CGAGGACACC
GGTGGCGACA AGCCCAAGGC CAAGCCGCTG CGCATGAAGG TCTCGCGCGC CAAGGAGCGC
GCGCTGATGC GCGAATTCGG TCTCGATGAG ACGGCGCTGA CCGAGGACGA GGTGGCCAAG
CGCCGCCAGG AGCTCAAGAC GCTCATCAAG ATGGGCAAGA CCCGGGGTTT CCTGACACAC
CAGGAAATCA ACGACCACCT GCCCGAAAAG CTGATCGAGG CCGAGATCCT CGAGGCCATC
GTGTCGATGC TCAACGACAT GGGCATCGCC GTCTACGAGC AAGCACCCGA CGCGGCCACG
CTGCTGATCG CCGGCGGCTC GACCGCCACC TCGACCGATG AGGAGGCCGA GGAAGAGGCC
GAGGCGGCGC TGTCGACCGT CGACTCCGAG TTCGGCCGCA CCACCGACCC GGTGCGCATG
TACATGCGCG AGATGGGCAC GGTCGAGCTG CTGACGCGCG AGGGTGAGAT CGAGATCGCC
AAACGCATCG AGGGCGGGCT GCAGGCGATG ATGCTGGCGA TCAGCGAATC GCCCACCACG
ATCGCCGAGA TCCTGGTGCT GGCCGACAAG ATCCGCGTCG GCGAGATGCA GATCTCGGAG
GCGGTCGACG GCTTCGTGTC GAACGAGGAG GCCGACGACT ACGTCGCCGA AGAGGACTTC
GACGAGTTCG ACGAGGAAGA CGACGACGAC GGCAACGGCG GCTCGAAGGC GCTGACCAAG
AAGCTCGAGG AACTGAAGAC GCAGGCGCTG GTGCGTTTCG ACGAACTGCG CACGCACTTC
GACCGCATGC GCAAGGCCTA CGAGAAGGAA GGCTACAAGT CGCCGGCCTA CAACCGCGCG
CAGATGGGCG TGAGTTCCGA GATCATGAGC CTGCGCTTCA CGGTCAAGAC CATCGAGCGG
CTGTGCCAGA TCCTGCGCTC GCAGGTCGAC GACATCCGCC GCTACGAGCG CGAACTGCGC
AAGATCGTGG TCGACAAGTG CGGCATGCCG CAGGACCACT TCATCAAGAC CTTCCCGCCA
AACTCGCTGA ACCTCAAGTG GGCCGAGAAG GAGATCGCAG CCAACAAGTC GTACAGCGCG
GTGATGGCGC GCAACCTGCC GCCGATCCAG GACCTGCAGC AGAAGCTGAT CGACCTGCAG
AGCCGTGCGG TGGTGCCGAT CGACGACCTG AAGCTCATCA ACAAGAAGAT GAACCAGGGC
GAGAAGGCCT CGCGAGACGC GAAGAAGGAG ATGATCGAGG CCAACCTGCG CCTGGTGATC
TCGATCGCGA AGAAGTACAC CAACCGCGGC CTGCAGTTCC TCGATCTGAT CCAGGAAGGC
AACATCGGCC TGATGAAGGC GGTCGACAAG TTCGAATACC GCCGCGGCTA CAAGTTCTCG
ACCTACGCGA CGTGGTGGAT CCGCCAGGCC ATCACGCGCT CGATCGCCGA CCAGGCGCGC
ACCATTCGCA TTCCGGTGCA CATGATCGAG ACGATCAACA AGATGAACCG CCTGTCGCGC
CAGCACCTGC AGGAGTTCGG CTTCGAGCCG GACGCCCCGA CGCTGGCCGA AAAGATGGAG
ATGCCCGAGG ACAAGATCCG CAAGATCATG AAGATCGCCA AGGAGCCGAT CTCCATGGAG
ACGCCGATCG GCGACGACGA CGATTCGCAC CTGGGCGACT TCATCGAGGA CACCAACAAC
ACCGCGCCGA TCGAGGCGGC GATGCAGGCA GGTCTGCGCG ACGTGGTGAA GGACATCCTC
GACTCGCTGA CGCCGCGCGA GGCCAAGGTG CTGCGCATGC GCTTCGGCAT CGAGATGTCG
ACCGACCACA CGCTGGAGGA AGTGGGCAAG CAGTTCGACG TGACGCGCGA GCGCATCCGC
CAGATCGAAG CCAAGGCGAT CCGCAAGCTC AAGCACCCGA GCCGTTCCGA CAAGCTGAGG
ACCTACCTGG ACAATCTCTG A
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| Protein sequence | MTAKKSAPAP ASKPSKTAAP APAAKAAAKS AGKAEIDPKK AKAAAAPAKA AGKTAKVAVP
EAPKGKPGRK PAAKQALPVL DEDLGDIEAD LEGEASAEDT GGDKPKAKPL RMKVSRAKER
ALMREFGLDE TALTEDEVAK RRQELKTLIK MGKTRGFLTH QEINDHLPEK LIEAEILEAI
VSMLNDMGIA VYEQAPDAAT LLIAGGSTAT STDEEAEEEA EAALSTVDSE FGRTTDPVRM
YMREMGTVEL LTREGEIEIA KRIEGGLQAM MLAISESPTT IAEILVLADK IRVGEMQISE
AVDGFVSNEE ADDYVAEEDF DEFDEEDDDD GNGGSKALTK KLEELKTQAL VRFDELRTHF
DRMRKAYEKE GYKSPAYNRA QMGVSSEIMS LRFTVKTIER LCQILRSQVD DIRRYERELR
KIVVDKCGMP QDHFIKTFPP NSLNLKWAEK EIAANKSYSA VMARNLPPIQ DLQQKLIDLQ
SRAVVPIDDL KLINKKMNQG EKASRDAKKE MIEANLRLVI SIAKKYTNRG LQFLDLIQEG
NIGLMKAVDK FEYRRGYKFS TYATWWIRQA ITRSIADQAR TIRIPVHMIE TINKMNRLSR
QHLQEFGFEP DAPTLAEKME MPEDKIRKIM KIAKEPISME TPIGDDDDSH LGDFIEDTNN
TAPIEAAMQA GLRDVVKDIL DSLTPREAKV LRMRFGIEMS TDHTLEEVGK QFDVTRERIR
QIEAKAIRKL KHPSRSDKLR TYLDNL
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