| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A1996 |
|---|
| Symbol | ispG |
|---|
| ID | 4783783 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | - |
|---|
| Start bp | 2138219 |
|---|
| End bp | 2139517 |
|---|
| Gene Length | 1299 bp |
|---|
| Protein Length | 432 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640090566 |
|---|
| Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
|---|
| Protein accession | YP_001021189 |
|---|
| Protein GI | 124267185 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
|---|
| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.165352 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGGC CAGTAGCGTC CACAGGGACC CGCAGTGACG CCGAAGCGAT CGACGTGGCG
CAGCCTGCCG CGCGCCGTTC GCTGCAGGCG CGTGTCGTCT GGGGCAGCAA TGTCGTGACG
GTCGGTGGCG ACGCCCCGGT GCGCGTGCAG TCCATGACCA ACACCGACAC GGTGAATGCG
ATCGAGACTG CGATCCAGGT CAAGGAGCTG GCGTTGGCGG GCTCGGAGTT GGTGCGCATC
ACGGTCAACA CGCCGGAGGC GGCGCAGGCC GTGCCGCACG TGCGCGAGCA GCTAGACCGC
ATGGGCATCT CGGTGCCGCT GATCGGCGAT TTCCACTACA ACGGCCACCG CCTGCTGACC
GAGTTCCCGG ACTGCGCGGC CGCGCTGTCG AAGTACCGCA TCAATCCCGG CAACGTGGGC
AAGGGCGACA AGCGCGACCG GCAGTTCGCG ATGATGATCG AGGCCGCGAT GCGCCACGAC
AAGCCTGTGC GTATCGGCGT CAACTGGGGC AGCCTCGATC AGGAACTGCT GGCGGCTTTG
ATGGACGAGA ACGCCGCCCG CGCCCGGCCC TGGGACGCGA AGCAGGTGAT GTACCACGCG
CTGATCAGCT CGGCGCTGCA GTCGGCCGCA TATGCGCGCG AGCTGGGCAT GGACCCGTCC
CAGATCCTCA TCAGCTGCAA GGTCAGCGGC GTGCAGGACC TCGTGAGCGT CTACCGCGCA
CTGGCGCGAC GCTGCGATTA CCCGCTGCAC CTCGGGCTCA CCGAAGCCGG CATGGGCACC
AAGGGCACCG TGGCGTCGAC CGCGGCGCTG GCGATGCTGC TGCAGGACGG CATCGGCGAC
ACCATCCGCG TCAGCCTCAC GCCGCAGCCG GGCGAGGCCC GCACGCAGGA GGTGGTGGTG
GCGCTCGAGA TCCTGCAGTC GCTCGGCCTG CGTGCCTTCA ATCCCAGCGT CACCGCCTGC
CCGGGCTGCG GCCGCACCAC CAGCACCACC TTCCAGGAGC TGGCCAAGCA GATCGACGAC
TTCCTGCGGG CACAGATGCC GGTCTGGAAG GCGCGTTACC CGGGCGTGGA GAACATGAAG
GTGGCGGTGA TGGGCTGCAT CGTCAACGGG CCTGGCGAGA GCAAGCATGC CGATATCGGC
ATCAGCCTGC CCGGCACCGG CGAGGCGCCT GCCGCGCCGG TGTTCATCGA TGGCGAGAAG
GCGATGACCT TGCGCGGCGA GGGCATCGCG CGCGAGTTCC AGAACGTCGT CGAGCACTAC
ATCGAGCGCC GTTACGGCAG CATCACCGCC GCGCATTGA
|
|---|
| Protein sequence | MNRPVASTGT RSDAEAIDVA QPAARRSLQA RVVWGSNVVT VGGDAPVRVQ SMTNTDTVNA
IETAIQVKEL ALAGSELVRI TVNTPEAAQA VPHVREQLDR MGISVPLIGD FHYNGHRLLT
EFPDCAAALS KYRINPGNVG KGDKRDRQFA MMIEAAMRHD KPVRIGVNWG SLDQELLAAL
MDENAARARP WDAKQVMYHA LISSALQSAA YARELGMDPS QILISCKVSG VQDLVSVYRA
LARRCDYPLH LGLTEAGMGT KGTVASTAAL AMLLQDGIGD TIRVSLTPQP GEARTQEVVV
ALEILQSLGL RAFNPSVTAC PGCGRTTSTT FQELAKQIDD FLRAQMPVWK ARYPGVENMK
VAVMGCIVNG PGESKHADIG ISLPGTGEAP AAPVFIDGEK AMTLRGEGIA REFQNVVEHY
IERRYGSITA AH
|
|---|
| |