| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A1681 |
|---|
| Symbol | virB8 |
|---|
| ID | 4785473 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | - |
|---|
| Start bp | 1807569 |
|---|
| End bp | 1808216 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640090254 |
|---|
| Product | type IV secretory pathway, VirB8 component |
|---|
| Protein accession | YP_001020878 |
|---|
| Protein GI | 124266874 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3736] Type IV secretory pathway, component VirB8 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.944292 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.516044 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGAAC GCTCGGAGCG CCGGGCCTGG TGGGTCGCCA TTGCCGGCCT GGTGCTGGGC
CTGATCGGCA TCGCCGCGGT GTTCGTCCAG GGCCCGCTGC GCCGCGTGGT GGAGATCCCC
ATCGTGGTCG ACCGGGTCAC TGGCGAGGCC ACGGTCCAGC AGCGACTCTC CGTCGAGACC
ATCCCCCCGA TGGAGGCGCT GGACAAGCAC AACCTCGCCA CCTTCGTGCG GGCACGCGAG
GGCTACAGCT GGATGTTCCT TCAGCGCGAC TTCGACCAGG TTGCGCGCAT GGCGGTGCCG
GCGGTCTTCG CCGACTACAA CCGTCAGTTC GAGGGCGACG GCGCGCTGCA GAAGCGGATC
GGTGCCGCCG AGGACTGGCG CATCAATGTC GTCGGCGTAC GCCTAGCTGC GTCCGGCCGC
CCCGGCAACC AGGGCGAGGC CACGGTCACC TACGACAAGG TAGTGCGCCT GACGGACCGC
AACCTGCCCG AGGTCACCAC GCGCCACGTG GCCAGCGTCG TCTACCAGTA CCAGCCCAAG
GTCCTGGCCA AGGAGCGCGA CCGGCTCGAG AACCCGTTCG GCTTCGTCGT AACTGCCTAC
CGGTCCGATC CCGAGATCAA CACCGCGGCA CCGGGGGCCA AGCCATGA
|
|---|
| Protein sequence | MLERSERRAW WVAIAGLVLG LIGIAAVFVQ GPLRRVVEIP IVVDRVTGEA TVQQRLSVET
IPPMEALDKH NLATFVRARE GYSWMFLQRD FDQVARMAVP AVFADYNRQF EGDGALQKRI
GAAEDWRINV VGVRLAASGR PGNQGEATVT YDKVVRLTDR NLPEVTTRHV ASVVYQYQPK
VLAKERDRLE NPFGFVVTAY RSDPEINTAA PGAKP
|
|---|
| |