| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A1261 |
|---|
| Symbol | |
|---|
| ID | 4785838 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | + |
|---|
| Start bp | 1357698 |
|---|
| End bp | 1358849 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640089827 |
|---|
| Product | carbamoyl-phosphate synthase small subunit |
|---|
| Protein accession | YP_001020458 |
|---|
| Protein GI | 124266454 |
|---|
| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0505] Carbamoylphosphate synthase small subunit |
|---|
| TIGRFAM ID | [TIGR01368] carbamoyl-phosphate synthase, small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00672288 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | GTGCTGCCAG ATCTGCCCCT CGCTCTACTT GCTCTCGCAG ACGGCACGGT CTTTCAAGGT
ACCTCGATCG GCGCGGCCGG TCGCACGGTC GGCGAGGTGG TGTTCAACAC CGCGCTCACC
GGCTACCAGG AAATCCTCAC CGACCCGAGC TACTGCCGGC AGATCGTCAC GCTGACGTAT
CCGCACATCG GCAACACCGG CGTCAACGAG GAGGATGTCG AAGCCTCGAA AGTCCATGCC
GCCGGCCTGA TCATCAAGGA CCTGCCAGTC CTCGACTCGA ATTTCCGCAA GACCCGCACG
CTGTCGCAGT ACCTGCGCGA CGAAGGAACG GTGGCGATCG CCGACATCGA CACCCGCAAG
CTCACCCGCA TCCTGCGCAC CGGCGGGGCC CAGAACGGCT GCATCGTGGC GCTGCCGCGC
GGGGAGACCT TCACCGAGGC GCTGGTCGCC GACGCGGTGG CCCGGGCGCG CAGTGCGCAG
AGCATGGCAG GCCTGGATCT CGCCAAGGTC GTGAGCACTG CGATGCCCTA CGGTTGGACC
GAGACCGAGT GGTCGCTGGG CACCGGCTAC GGCACCCAGG CGGCGCCGAA GTTCCACGTC
GTCGCCTATG ACTTCGGCGT CAAGCGCAAC ATCCTGCGCA TGCTGGCCAG CCGCGGCTGC
CAGGTCACGG TGGTGCCGGC CAAGACGCCG GCCGCGGAGG CGCTGCTGCT GAAGCCGGAC
GGCATCTTCC TCAGCAACGG CCCGGGCGAC CCCGAGCCCT GCGACTACGC GATCGAGGCA
ACGCGCACGC TGATCGACAC CGGCCTGCCG GTGTTCGGCA TCTGTCTGGG TCACCAGATC
ATGGCGCTGG CTTCGGGGGC GAAGACCTTC AAGATGAAGT TCGGGCACCA CGGCGCCAAC
CACCCGGTAA AGGACCTGGA CGACGGCCGC GTCAGCATCA CGAGCCAGAA CCACGGTTTC
GCGGTCGACG AGAAGTCCCT GCCGGCCACC CTGCGCCCCA CGCACGTGAG CCTGTTCGAC
GGCACGCTGC AGGGGCTGGC GCGCACCGAC AAGCCCGCCT TCTGCTTCCA GGGCCACCCG
GAAGCGTCTC CCGGGCCGCA CGACATCGGC TACCTGTTCG ACCGCTTCAT TGCGCTGATG
GAAAAGAACT GA
|
|---|
| Protein sequence | MLPDLPLALL ALADGTVFQG TSIGAAGRTV GEVVFNTALT GYQEILTDPS YCRQIVTLTY
PHIGNTGVNE EDVEASKVHA AGLIIKDLPV LDSNFRKTRT LSQYLRDEGT VAIADIDTRK
LTRILRTGGA QNGCIVALPR GETFTEALVA DAVARARSAQ SMAGLDLAKV VSTAMPYGWT
ETEWSLGTGY GTQAAPKFHV VAYDFGVKRN ILRMLASRGC QVTVVPAKTP AAEALLLKPD
GIFLSNGPGD PEPCDYAIEA TRTLIDTGLP VFGICLGHQI MALASGAKTF KMKFGHHGAN
HPVKDLDDGR VSITSQNHGF AVDEKSLPAT LRPTHVSLFD GTLQGLARTD KPAFCFQGHP
EASPGPHDIG YLFDRFIALM EKN
|
|---|
| |