Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mpe_A1256 |
Symbol | rumA |
ID | 4785833 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylibium petroleiphilum PM1 |
Kingdom | Bacteria |
Replicon accession | NC_008825 |
Strand | + |
Start bp | 1353409 |
End bp | 1354773 |
Gene Length | 1365 bp |
Protein Length | 454 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640089822 |
Product | 23S rRNA 5-methyluridine methyltransferase |
Protein accession | YP_001020453 |
Protein GI | 124266449 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.193423 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGCAG GCGATGAATG GTTGACGGTC GAGTCGCTCG ACCTCGAGGC ACAAGGCGTG GCGCACAACG CCGAAGGCAA GGTGGTGTTT GTCGAGGGCG CCTTGCCGGG TGAGCAGGTT CTGGTGGCCG TGGGACGGCG CAAGAACAAC TGGGAGCAGG GCACGATGAC GGCGCTGCGC CGCGAGAGCT CGCAACGCGT CACGCCGCGT TGCGAGTACT TCGGACTCTG CGGCGGCTGC AAGATGCAGC ATTTCCATGT CGGTGCTCAG GTCGCGGTGA AGCAGCGGGT GCTGGAGGAC AACCTCTGGC ATCTGGGCAA GGTGAAGGCC GGCCAGATGC TGCGGCCCAT CGAGGGGCCG ACCTGGGGCT ATCGCTACCG GGCGCGCCTG TCGGTGCGGC ATGTCGTCAA GAAGGGCAAG GTCCTGATCG GCTTCCACGA GCGCAAGTCG AGCTACGTGG CGGACATGAG CCGCTGCGAG ATCCTGCCGC CGCACCTGAG TGCGATGCTG CTGCCACTGC GCGCCCTGAT TGCCGCCATG GACGGCCGCG ACCGGCTGCC GCAGATCGAG GTGGCGATCG GCGAGGCGCC CGACGGGCTC GTGACGGCGC TGGTGCTGCG CCACCTCGAG CCCCTGAGCG CAGACGACCT GCAGAGGTTG CGGGCTTTTG GCGCCGAGCA CGGCGTGCAG TGGTGGCTGC AGCCCAAGGG GCCCGACACC GTGCAGCGGC TCGACGACGG CGGACCTCAG CTCGCCTACA CGTTGCCGGA ATACGGCGTC GTCATGCCCT TCAAGCCGAC CGATTTCACC CAGGTCAACC ACGCCATCAA CCGCGCGCTG GTGGTGCGGG CGCTGCGGCT GCTGGCCGTG CAGGGCGACG AGCGCGTGAT CGACTGGTTC TGCGGGCTCG GCAATTTCAC GCTGCCGCTG GCCACGCAGG CGCGAGAGGT GCTCGGGATC GAGGGCAGCG AAGCATTGGT GGCGCGCTCA CGGGACAACG CGGCGCTCAA CGGCCTGTCG CACAAGACGC GCTTCGACGC GCGCAACCTG TTCGAACTGC TGCCGGCGGA TCTGGTGGCC TACGGCAGCG CGACAAAGTG GCTGGTCGAC CCGCCGCGCG AGGGCGCATT CGCCCTGGCC AAGGCCGTGG CCGATGCGGT GCAGGACCCG GGGCAGGCGC CCGGCTGGGT GCCACCGGCG CGCATCGTGT ACGTGAGCTG CAATCCGGCC ACGCTGGCGC GCGACGCCGG CCTGCTGGTG CACCAGGCCG GCTACCGCTG CGTGCAGGCT GGCGCAGTGA ACATGTTCCC GCACACCGCG CATGTGGAAA GCATTGCGGT CTTCGACCGC AATGCTTCGG CTTAG
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Protein sequence | MTAGDEWLTV ESLDLEAQGV AHNAEGKVVF VEGALPGEQV LVAVGRRKNN WEQGTMTALR RESSQRVTPR CEYFGLCGGC KMQHFHVGAQ VAVKQRVLED NLWHLGKVKA GQMLRPIEGP TWGYRYRARL SVRHVVKKGK VLIGFHERKS SYVADMSRCE ILPPHLSAML LPLRALIAAM DGRDRLPQIE VAIGEAPDGL VTALVLRHLE PLSADDLQRL RAFGAEHGVQ WWLQPKGPDT VQRLDDGGPQ LAYTLPEYGV VMPFKPTDFT QVNHAINRAL VVRALRLLAV QGDERVIDWF CGLGNFTLPL ATQAREVLGI EGSEALVARS RDNAALNGLS HKTRFDARNL FELLPADLVA YGSATKWLVD PPREGAFALA KAVADAVQDP GQAPGWVPPA RIVYVSCNPA TLARDAGLLV HQAGYRCVQA GAVNMFPHTA HVESIAVFDR NASA
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