| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A0956 |
|---|
| Symbol | |
|---|
| ID | 4787339 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | + |
|---|
| Start bp | 1013538 |
|---|
| End bp | 1015574 |
|---|
| Gene Length | 2037 bp |
|---|
| Protein Length | 678 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640089518 |
|---|
| Product | transcriptional regulatory protein |
|---|
| Protein accession | YP_001020153 |
|---|
| Protein GI | 124266149 |
|---|
| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCAACA GCCATTTCCC CAAGCCCGTG ACGACGCCGC CGTTGTCGAT CGGGCCACAA
GGCGAGTTCG AGCCGCAAGG TGTTCGGGAG ACCACACAGG CCTGGGAGCA GTTCGTCTCC
GGGCAGTCGC TCGTGCAGTC GGCCGTGCCC AAGCACGTGC TGTCGTCGTG GCAGCGCAGC
CGCCGCTTCG GCGTCGAACC CGGCTCGCGC AAGGCCCCGC TCGCGATCCG GGGCGACGAC
GAGCTCGAGC AGCTCCGGCT GCGCAACCGC GATCTGGTCT GGGCCGCGCA GGGCATCTTC
ATGTCGTCGG CACACCTGCT CGCGAAGTCG GGCTCGATCA TGCTGCTGAC CGATGCCACC
GGCATCGTGC TCGAATCATC GGGCGATGCG CGCACGCTGG ACGCGGCGCA GGATATCCAC
CTGACCCACG GCGGCAACTG GAACGAGAGC GTGGTCGGTA CCAACGGCAT CGGCACCGCG
CTGGCCACCG GCCGGCCGAT CCAGGTGCAT GCCGCGCAGC ATTTCTGCGA AGGCATCAAG
AGCTGGACCT GCGCGGCCGC CCCGGTCTAC CTGTCCGGCA CCGATCAGCT GCTCGGCGTG
ATCGATATCT CGGGCCCGCC CGCGACCTTC CAGCTCAACA ACCTCGCGCT CGCCGTGGCG
TGCGCCCGGC AGATCGAGTC GGTGCTGGCC GAGCGCACCA GCCGCGAGCA CAACGTGCTG
CTGGAGGCCT GCCTCAACCA CCCGGGGCGG GCCGGCGCCG CCGCCATGGT GGTGATCGAC
CGCAACGCGC GCATCGTGCA CAGCAGCGGC TGCCTCACGC CGGATCTCGC GGTGCGGCTG
GCGGACGGTC TCAAGGGGCG CCAGATCTCC GCCTGGAACA ACCGGCTGCC GGACGGGCTG
CTGGGCGAAT GGATGAACCC GGTGCGCCTC GACGGCAGCG CGATCGGCGC GCTGCTGATC
GTGCCCAAGC GCTCGATCGG CCGGATCCTG CAGCGCCCGG AAGGCGATCT GCCCCAGCTT
CCGGCACCGG CCGCGCCGAC CCTCGCCGCC GCCCCGGCAC CGGAGTGCCT GCCGGGCGTG
GTGGGCGCCA GCAGTGTCTT TCGCGGCGCG ATCGAACGCA CCAAGCTGCT CGGGCGTCGC
CGGGTCTCGG TGCTGATCCA GGGCGAAACC GGAGCGGGCA AGGAGTTGTT CGCCCGCGCA
CTGCACGAGG AGGAGCGCAA GGGCGGCAGC TTCGTGGCCT TCAACTGCGG CGCGACGACC
AAGGAGCTGA TCGGCAGCGA GCTCTTCGGG CACGTGCGCG GCGCCTTCAC CGGGGCCACC
AGCGAAGGAC GAGCCGGGCG CTTCGAACTC GCCCACGGCG GCACCTTGTG CCTCGACGAG
GTGGGCGAGC TGCCGCTGGA CCTGCAGCCG GTGCTGCTGC GCGCGCTCGA GGAGGGCGTG
GTCTACCGGC TCGGCGACAC CACGCCGCGG CCGGTCGACG TGCGGCTGGT GGCGATGACC
AACCGTGATC TGCTGCAGGA GGTCGAGGCA GGGCGCTTCC GTCGCGATCT CTTCCATCGC
ATCGGCGTCA CGCGGATCCA GGTGCCGGCC CTGCGGGAAC GCGATGGCGA CGTCGACCTG
CTCGTCGACC ACTTCGTGCG GACGCTGTCG GTGCGCCATG GCGTCGCGAG CCGGGAGATC
GGCCCGGACG TTCGGCAGCT GTTGCGGGCC TATGCCTGGC CCGGCAATGT GCGTGAACTG
CGCAACGTGA TCGAGTCGCT CCTGCTCACC TCCGATGACG AGGTGGTGCG GCGGGAGGAG
TTGCCGGCAG AACTGCTGGC GACGCTCGAC GGCGCCAAGG CTCCGGCGCT CGACGCCGAT
CTCACGAGCC TGGAGGCCAC TGAACGCCTG ACCATCCTGC AGGCGATCCA GCGCGTGCAC
GGCAACCTGG CGTTGGCTGC ACGGGTGCTC GGCATCTCGC GCAGCACGCT GTACCGGAAG
GTCGAGCGCT ACCAGCTCGA CGATGTCGTG AAGGCGAGCA ACGATGGCGA AAACTGA
|
|---|
| Protein sequence | MVNSHFPKPV TTPPLSIGPQ GEFEPQGVRE TTQAWEQFVS GQSLVQSAVP KHVLSSWQRS
RRFGVEPGSR KAPLAIRGDD ELEQLRLRNR DLVWAAQGIF MSSAHLLAKS GSIMLLTDAT
GIVLESSGDA RTLDAAQDIH LTHGGNWNES VVGTNGIGTA LATGRPIQVH AAQHFCEGIK
SWTCAAAPVY LSGTDQLLGV IDISGPPATF QLNNLALAVA CARQIESVLA ERTSREHNVL
LEACLNHPGR AGAAAMVVID RNARIVHSSG CLTPDLAVRL ADGLKGRQIS AWNNRLPDGL
LGEWMNPVRL DGSAIGALLI VPKRSIGRIL QRPEGDLPQL PAPAAPTLAA APAPECLPGV
VGASSVFRGA IERTKLLGRR RVSVLIQGET GAGKELFARA LHEEERKGGS FVAFNCGATT
KELIGSELFG HVRGAFTGAT SEGRAGRFEL AHGGTLCLDE VGELPLDLQP VLLRALEEGV
VYRLGDTTPR PVDVRLVAMT NRDLLQEVEA GRFRRDLFHR IGVTRIQVPA LRERDGDVDL
LVDHFVRTLS VRHGVASREI GPDVRQLLRA YAWPGNVREL RNVIESLLLT SDDEVVRREE
LPAELLATLD GAKAPALDAD LTSLEATERL TILQAIQRVH GNLALAARVL GISRSTLYRK
VERYQLDDVV KASNDGEN
|
|---|
| |