| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A0661 |
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| Symbol | |
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| ID | 4784788 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylibium petroleiphilum PM1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008825 |
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| Strand | + |
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| Start bp | 695493 |
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| End bp | 698513 |
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| Gene Length | 3021 bp |
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| Protein Length | 1006 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640089220 |
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| Product | signal transduction protein |
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| Protein accession | YP_001019858 |
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| Protein GI | 124265854 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAACG ACCCGATGGC CAGCGGCGGT TTTCCACCGA CCCCGCGCGC GCAGCCCGAG
CGGCCCGAGC GGTCGCTGGC GGCCTCGCTC GCGCTGCTCG CCGTCCTGCA CTTCGTGTTC
GCCTACGGCG CGATCCACCT GTCCCGTCAG CCGGGCAGCG TCGCCACGCT CTGGTATGCC
AATGCGGTGG TCGCGGTCGT GCTGCTGTCG CGCCGGCGCG CCGAATGGCC GCTGCACCTG
CTGGCGATGG CCGTGGCCAA TGTCGCCGCC AACCTGTTCA GCGGGCACGC GCCCGGTCTG
AGCCTGTCTT TCCTGCTGCC CAATCTGCTG GAGGCCTCGC TCGCGGCTGC ACTGCTGCGT
CTGGCCGGAC CGCCCGCGCG CTGTGTCCAA CAGGTCGGAG CGCTGCTGTG GGCGCTGGTG
CTGGGGGCCG TCGTGCCGAG TCTCGTCGGC GCCACGATGG GAGCGGCGGT GCTGTCGATG
CAGTTCGACG CGCCCGTGGG CTCGCTGTGG TCGGCCTGGT TCGTCGGCAC GGTCATCGGT
GGCGTGTCGG TGCTGCCGCT GGGCCTGCTG CTGCTGGCGC GTGGCGGTCG GGCGGTGTGG
GCGGCGCTGG CCCGGCCCGC GGTGGCCGCG GTGGTGCTGG TCGCGGTCGC GACCGCGGCC
TCGGCCTCGG TGTTCTCGCA TTTCCGCTAC GTCTACGTGT CCGTCGCGCT GATGCTGGTG
GCGGCCGTCG GGGGCTTCGC CGGCGCAGCC ACCGGCGGCC TGCTCGCCTC GCTGTCGGTC
GGCATCGTCA TCGCGCTCGG CCTGTTCCAA CCCGGGCCGG GCGAGGGCTG GCTGGAGACG
GTGGCCTTCT ACCTGCCGGT GGTGCTGACG CTGGTGCCGC CGCTGCTGCT GGCCGCTGCG
ATGGAGCGCA ACCGCCAGCA TGTCCACGAG ATCGAGGACC GCGAGGCGCA GTTCCGCACG
CTGTACGAAC GCACGCCGGT GATGATGCAC TCGGTCGACG TCGAGCGCCG GCTGGTCGCG
GTCAACGACG CCTGGCTGGC CCGCCTGGGC TACGAGCGCT CCGAGGTCCT CGGGCGCCGT
TCCACCGAGT TCCTGACCGC CGAGTCTCGC GAGCGCGCGG AGCGGTCGAT CATTCCACGC
TTCATGCGCG AAGGCGAACT GCGCGACATG GACTACCAGA TGGTGACCAG GTCCGGCGAG
GTGCTCGACG TGCAGATCTC CGCCATCTGG GAGACCGACG CGCACGGGCA GCCTTTGCGC
ACGCTCGCCG TTCTGAAGGA CGTGACCGAG CAGAAGCGTC TGGCGCTCGA GCTGGCGGCC
GAGAAGGAGC GCATCGAGGT CACGCTGCAC TCGATCGGCG ACGGCGTGAT CAGCACCGAC
GAAGCGGGGC GCATCACCTA TCTCAATCCG GTGGCAGAGC AGATGGTCGG TTGCCTGCTC
GCGCAGGCCC GGGGCCTGCC GTTCGCGCAG GTCGTCCAGC TGTTCGACCA GGAGAGCGGC
GCGCCGCTGC CGAGCCCGGT CGAGCAGTGC CTGCAGGACC GCGAGGTCTA TGGCGTGCGG
GAAAGCGCGG CGCTGCGGCA CCGCTCCGGC CGCGACTACG GCGTGCAGAT CTCGGCCGCA
CCGATCGCGG GGCGTGATGG ACGGGTGCTC GGCGCGGTGA TGGTGTTCCA GGACGTGACC
GAGGCCCGCG GCCTGGCGCA GAAGATGTCC TACCTGGCCC ATCACGACGG CCTCACCGGC
CTGCCCAACC GCGTGCTGTT CCAGGACCGC GTGCACCAGG CCTGCCAGTC CGGACGCCGG
CATGGCCGGC GTTTCGCGGT GATCTTCATG GACCTGGACC ACTTCAAGCA CGTCAACGAT
TCGCTGGGCC ATGCGGTCGG CGACGAGCTG CTGAAGGCGG TGGCACAGCG GCTCACCGGC
GCGCTGCGCG CCAGCGACAC CATCTGCCGT CTCGGCGGCG ACGAATTCGT GGTGCTGCTG
TCCGACCTCG ACGACGTCGA GGTCGATGGC GTGGCCGAGG TCGCCAAGAA GATCCTGCGG
CAGGTGGCCC AGCCGTGCGT GCTGGGTGGC ACCGAGGTCA ACGTCGGCGC AAGCCTCGGC
ATCGCGCTGT TCCCGGGCGA TGGCGAAGAC CCCGACACAC TGATGAAGCG TGCGGATGCG
GCCATGTACC GGTCCAAGCG CGAAGGCCGC AACCGCTATC ACTTCTTCTC GAAGGCGGTC
GACGATGCCG CCTCGGCGCG GCTGCAGCTC GAGGCGGACA TGCGCCGCGC GCTCGCGGCG
GGCCAGTTCA TCGTGCACTA CCAGCCGGTG GTCCATGGCC GCACGCGCGA TGCGGTCGCC
GTCGAGGCCC TGTTGCGCTG GGATCGTGCG GGCCAGGGCC TGCAGAGCCC GGCCGTCTTC
ATCCCGGTGG CCGAGGAGAG CGGCCTGATC GTGCCGATGG GCCACTGGGT CCTGCGCCAG
GCCTGCGAGC AGCTGCGGGC GTGGTCGGGC ACCGCGCTCG GCGGCATCTC GGTCGCGGTC
AACGTCTCGC CGGTGCAGCT GGCGCAGGCA GATTTCGTCG ACACCGTGGC CGACGTGCTG
CACGCCACCG GCGTCGACGG CAGCCGTCTC GAGTTCGAGA TCACCGAGTC CACGCTGATG
CAGGACCCCG AGGCCACGCT GGAGATGCTG CGCCGCCTCA AGGGCCTGGG GGTGCGGATC
GCGATCGACG ACTTCGGCAC CGGCTATTCC AGCCTCGGCC ACCTCAAGCG CTTTCCGGTC
GACACGCTGA AGATCGACCA CACCTTCGTG CGCGACCTCG AGGCCGATGC CGATGACCGC
GAACTCGTCC GCGCGATCCT CGCCATGGCC CGCAGCCTGC GGCTGCACGT CGTGGCCGAG
GGCGTCGAGA CCGAGGCCCA GGCCGCGATC CTGGCCGCGA TGGAGTGTCC GGCTTTCCAG
GGCTACCTGT TCGCCCGGCC CGCCGGCGCC GCCGTGACGG CGGCGTGGCT GCAGGACCGG
GCCGCGACGC TCGCGCGGTG A
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| Protein sequence | MTNDPMASGG FPPTPRAQPE RPERSLAASL ALLAVLHFVF AYGAIHLSRQ PGSVATLWYA
NAVVAVVLLS RRRAEWPLHL LAMAVANVAA NLFSGHAPGL SLSFLLPNLL EASLAAALLR
LAGPPARCVQ QVGALLWALV LGAVVPSLVG ATMGAAVLSM QFDAPVGSLW SAWFVGTVIG
GVSVLPLGLL LLARGGRAVW AALARPAVAA VVLVAVATAA SASVFSHFRY VYVSVALMLV
AAVGGFAGAA TGGLLASLSV GIVIALGLFQ PGPGEGWLET VAFYLPVVLT LVPPLLLAAA
MERNRQHVHE IEDREAQFRT LYERTPVMMH SVDVERRLVA VNDAWLARLG YERSEVLGRR
STEFLTAESR ERAERSIIPR FMREGELRDM DYQMVTRSGE VLDVQISAIW ETDAHGQPLR
TLAVLKDVTE QKRLALELAA EKERIEVTLH SIGDGVISTD EAGRITYLNP VAEQMVGCLL
AQARGLPFAQ VVQLFDQESG APLPSPVEQC LQDREVYGVR ESAALRHRSG RDYGVQISAA
PIAGRDGRVL GAVMVFQDVT EARGLAQKMS YLAHHDGLTG LPNRVLFQDR VHQACQSGRR
HGRRFAVIFM DLDHFKHVND SLGHAVGDEL LKAVAQRLTG ALRASDTICR LGGDEFVVLL
SDLDDVEVDG VAEVAKKILR QVAQPCVLGG TEVNVGASLG IALFPGDGED PDTLMKRADA
AMYRSKREGR NRYHFFSKAV DDAASARLQL EADMRRALAA GQFIVHYQPV VHGRTRDAVA
VEALLRWDRA GQGLQSPAVF IPVAEESGLI VPMGHWVLRQ ACEQLRAWSG TALGGISVAV
NVSPVQLAQA DFVDTVADVL HATGVDGSRL EFEITESTLM QDPEATLEML RRLKGLGVRI
AIDDFGTGYS SLGHLKRFPV DTLKIDHTFV RDLEADADDR ELVRAILAMA RSLRLHVVAE
GVETEAQAAI LAAMECPAFQ GYLFARPAGA AVTAAWLQDR AATLAR
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