| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1948 |
|---|
| Symbol | |
|---|
| ID | 7270752 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 2063742 |
|---|
| End bp | 2064527 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 643570562 |
|---|
| Product | thiamine pyrophosphate protein domain protein TPP-binding |
|---|
| Protein accession | YP_002466975 |
|---|
| Protein GI | 219852543 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1013] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0727116 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTTA TGGACTGGTA CCGGCAGGAC CGGCTTCCGC ACATCTACTG TGCCGGCTGC
GGCAACGGCA CGATCATCAA CTGCACCCTC GGGGCCGTCG AGGAGATGGG CTGGAAGAAG
GAGGATACGG TCTTCGTCTC CGGGATCGGC TGCTCGTCCC GGGCGCCGGG GTACATCCAG
ACCGACTCGC TCCACACCAC CCACGGTCGG GCGCTCGCGT TCGCCACCGG GGTGAAACTG
GCCGCTCCAC GGCTGCATGT GATCGTCTTC ACCGGCGACG GCGATCTGGC CGCCATCGGC
GGGAACCACT TCATCCATGC CTGCCGGCGG AACGTCGACA TGACGGTGGT CTGCATGAAC
AACCAGATCT ACGGGATGAC TGGGGGGCAG GGCTCGCCGA CGACACCCTG CGGGGCGCTC
ACTTCAACGA CGCCGTACGG CGCCTGCGAG CCGGCCTTCG ACCTGACCGA ACTGGCCGTG
GCAGCCGGGG CGAACTACGT GGCCCGCTGG ACCACCTACC ATGTCAAGGA GCTGACTCGT
GCCATCAGGG TCGGGCTCGA GACCCCGGGC TTCTCATTCA TCGAGGTGCG TGCCCAGTGT
CCGACCAACT TCGGCCGGAA GAACAAACTG CGGGATGTGG CTGCGATGAT CGATCAGATG
AAGTCCCAGG CCCTGCTGAA ACAGAAGTAC GACCGGATGG TCGCCGAGGG AATCCCGATC
CCGCCGGACA GTTTCGTGGT CGGCGAGATC GTTCATCGGC AGCGGACCGT CACCGGGGTG
CACTGA
|
|---|
| Protein sequence | MTFMDWYRQD RLPHIYCAGC GNGTIINCTL GAVEEMGWKK EDTVFVSGIG CSSRAPGYIQ
TDSLHTTHGR ALAFATGVKL AAPRLHVIVF TGDGDLAAIG GNHFIHACRR NVDMTVVCMN
NQIYGMTGGQ GSPTTPCGAL TSTTPYGACE PAFDLTELAV AAGANYVARW TTYHVKELTR
AIRVGLETPG FSFIEVRAQC PTNFGRKNKL RDVAAMIDQM KSQALLKQKY DRMVAEGIPI
PPDSFVVGEI VHRQRTVTGV H
|
|---|
| |