| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1828 |
|---|
| Symbol | |
|---|
| ID | 7270374 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 1939690 |
|---|
| End bp | 1941036 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643570443 |
|---|
| Product | glutamate synthase (NADPH), homotetrameric |
|---|
| Protein accession | YP_002466857 |
|---|
| Protein GI | 219852425 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01316] glutamate synthase (NADPH), homotetrameric |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.756124 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGATC GCAAGGTAAA CGAACGGATC CGGGACTTTC ATGAGGTCGC GCTCGGTTTT
TCAGCAGACG AGGCGATCCT CGAGGCAGAG CGGTGCCTTC AGTGCAAAAA ACCGCTCTGT
GTGACTGGTT GCCCGGTCGG GATCGACATT CCGGCGTTCA TCAGCGCCAT CGCTGCAGGG
GACTTCTCGG TTGCAGCCAC CACGATCAAG GAGCAGAACA TGCTCCCTGC GATCTGCGGC
AGGGTCTGTC CGCAGGAGAC CCAGTGTGAG GGGGCCTGTG TCCTGAAGAA CAAGGACACA
CCGATCAATA TCGGTGCCCT GGAACGGTTC GCCGCGGATT GGGAGCGGGA ACGTGGTTTT
TCCGCCGAAC AGAAGTCACG GGAACAGACC GGCCGCCGTG TGGCGGTCGT CGGTTCGGGC
CCGGCCGGGT TGACTGCAGC AGCAGAGCTG GCCCGCCGCG GACATAAGGT TACGATCTTT
GAATCGCTTC ACGAAGCCGG GGGGGTGCTC AGTTATGGGA TCCCGGCATT CCGACTCCCC
AAAGAGATTG TGAAGGCCGA GATCGATCAG GTGCTCGCCA TGGGGGTCGA CCTGAAGGTG
AACTACCTGG TCGGCCGGTC GGTCTCTGTT CCGGAACTGC TCGCCTTCGA TGCGGTCTTC
ATCGCCACCG GCGCAGGTCT GCCCGGGTTC ATGGGGATCG AGGGCGAGCA GATGAATGGT
GTCTACTCGG CCAATGAGTA CCTGACCAGG GTGAACCTGA TGCATGCAGA CCAGTTCCCG
GTCTTTGACA CCCCGGTCAA AGCCGGGAGC CGGGTCGTTG TGGCCGGCGG GGGCAATGTC
GCCATGGATG CGGCCCGTGT CGCCCGCCGG ATGGGTGCCA GGGTCACGCT GGTCTACCGG
AGGCGGGAGG AGGATCTCCC GGCTCGAAGG GAAGAGGTCG TGCACGCCCT GGAGGAAGGA
GTCGAGATCA TTAACTGCGC CGCTCCAATT CGTCTCCTCG GCGACGGGGT GGTCACTGGT
GTCGAATGCG TGACGATGAA GATGTGCGGG CTCGATGGCA GCGGCCGGCC CACCCCTGAG
CCGGTGGCCG ACCAGACCTT TGTGATCGAT GCCGATGTCT TCATCGAGGC GATCGGTCAG
AGCCCGAACC CGCTGCTCAT CCGGGAGGTC AGCGGCCTCT CGATCGGTGC GCGTGGAAAT
CTGGTCGTCG ACGATGACGG GCGGACCAGT ATCGGGCATG TCTTTGCCGG TGGGGATGTG
GCCACCGGCG CTGCTACGGT GATCCTTGCG ATGGGTGCCG GAAAGACCGC AGCAGCGGCG
ATCGATCGTA TGTTTAAAGA GCAGTGA
|
|---|
| Protein sequence | MLDRKVNERI RDFHEVALGF SADEAILEAE RCLQCKKPLC VTGCPVGIDI PAFISAIAAG
DFSVAATTIK EQNMLPAICG RVCPQETQCE GACVLKNKDT PINIGALERF AADWERERGF
SAEQKSREQT GRRVAVVGSG PAGLTAAAEL ARRGHKVTIF ESLHEAGGVL SYGIPAFRLP
KEIVKAEIDQ VLAMGVDLKV NYLVGRSVSV PELLAFDAVF IATGAGLPGF MGIEGEQMNG
VYSANEYLTR VNLMHADQFP VFDTPVKAGS RVVVAGGGNV AMDAARVARR MGARVTLVYR
RREEDLPARR EEVVHALEEG VEIINCAAPI RLLGDGVVTG VECVTMKMCG LDGSGRPTPE
PVADQTFVID ADVFIEAIGQ SPNPLLIREV SGLSIGARGN LVVDDDGRTS IGHVFAGGDV
ATGAATVILA MGAGKTAAAA IDRMFKEQ
|
|---|
| |