| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1796 |
|---|
| Symbol | |
|---|
| ID | 7270342 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | + |
|---|
| Start bp | 1886216 |
|---|
| End bp | 1888762 |
|---|
| Gene Length | 2547 bp |
|---|
| Protein Length | 848 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643570411 |
|---|
| Product | PKD domain containing protein |
|---|
| Protein accession | YP_002466825 |
|---|
| Protein GI | 219852393 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3291] FOG: PKD repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACCA TGCCTGACAC AAAACATACG ATACAGACCT ACCTCATGGT AATACTGCTC
CTGACCATGG CGCTGCTGGT AGCCCCTGCA GGTGCAGAAC TTGTACAGTC GAACGGAACA
ACCTCTATCG GTGTCGATCA GACCCAGGAA CTGAAAGATA CTGCAGCCTT CTCCGCCAAC
AAACATGTAT TCTTCAATGT GGCGAACGAC GCCGGCGTGA AGTACAACTA TGACGGCGCA
CTCTACAGCG GCCCGAGCAA CACCTACTAC ATGAAGTTCG ATGGAGGCGG ATTGAATGCC
CTTCATATCA CCAGCGACCC CGCGAGCCCG TACGGGAATG TGATCGCGTC GAACGCCCAA
TCCGGTACCT TCTTTCTCTC CGACACCGGG GGGAGAGGAT TTGATGACGA TGGCATCCTG
ATGATCGCCG TAAAAGGGGA TGTCCCGAAC GACTTCAGGG TCCATATCCG GGCGAGCGGC
TACACCTGGA CACCGGCCAC TTCCGGAGTT TACAATCCAA CCATCCCGAG CTCAGTCACC
TACCAGCCGG TCTCCCTTGA CGAAACGTTC ACCAGGGACG ACCTCATCTA CGGCCCGCAG
AACTGGAAAC CATGTTCGGT GGCGAACTAT CCGATCTATA ACGGACAGGA TATGACGAAC
ACCCAGGACA CCTACCAGAT GATGTTCGTC GATCTGAAGT CAGGGATCAT CGGCAAGAAT
TCCACCGCCG GCGCCCCGGC ACTTACGGAC AATGGTGCGA TCCGGGTCGA TTACTCCTTC
GAAAACCTGA ACACCTTCGC TGCCTTCGAT GCCTTTGCAT GGTGCAGTGC CTCCAACCAG
GGGCAGGGGA TCACCTGGAC GAATGAGGTC GCCGCAGCCG GCTCGTCCTC GGGGTCCGCG
AACGGCTACA CCGTCACCGG TGTCCCACGG GCACCGGTCG CCGCCTTCAC CGCAAATACC
GTAAGCGGCC CGGCACCCCT TTCGATCGGG TTCACCGATC AGTCGACCAA CACCCCGACG
GCCTGGTCGT GGAACTTCGG CGACGGGACC ACCTCGACCG AGCAGAATCC ATCCCACACC
TACACGACAG ACGGTACCTA CTCGGTCGCC CTGACCGCGA GCAACGCCGG CGGCAGTAAC
ACGGTCACCA GGACCAGTTA TATCACCGTC CGCTCCACGA CCCCCACGAC AGGGCCGACA
ACGGTGCCGA CAACCGGCAA CACCACCGTG CCGACGACGG TGACGACGAT CCCCACCACC
GGAACGACAA CGGTCGCGAC ACCAACCCCA ACCATCACAA CACCGCCGCT GGCGGCCAAC
TTCACGGCGA ACGTGACGGC CGGCCAGTCC CCACTCGCCG TGCAGTTCAC CGACTCGACG
ACCGGTGCGG TCCAGAGTTA TTTCTGGCAG TTCGGCGACG GCGGGGCCTC GTATGACAGG
AACCCGGTGC ACACTTACAC GACAGCCGGC ACCTACACCG TCTCCCTCAT CGTCAGCGGC
CCCACCGGAA CCCAGGTGAA GACGAACGAG CAGTACATCA CCGTCACGGC GGTAGTGCCG
ACCATGACGA CGGTGGCCCC GCTCACCAAT TATCACCACA ACTATCTCCA GGTCTCAAAC
ACTGAAGGTG CCCGCTTCGA TCTCCACAAC AACGGTACCT ATTACCAGAA GAGCGACGGG
GGCGGGACCA ATGCGATCTG GATGACCGGA ACCCCGTCGG TTCCGCAGGG TCAGACGATC
AACACCACCA ACCAGTCGGG CGTCTTCTAC CTGACCGATA CCGGGGGAAG AGGGTTCGAC
GACGATGGCA TCCTCATGCT TGCGGTCAAC GGGACGATCC CTGACGACTT CAAGGTCCAT
ATCCGAGCGA GCGGGTATGC CTGGACACCG ATTCCAAACT ACCTTTCACC AACCGCGAAC
GATATAACCT ATGTCGACGG CTCGATCGAT GAGATCTTCA CCAAGGACGA CTTCATCTAC
GGCCCGCAGA TCTGGAAGCC GGCCGGGCAG GCGAACTACC CGATCTATAA CGGACAGAAT
CTGTCCGACA CGCAGAACAC CTTCCGGCTG ATGTTCATCG ATCTGCGTGC AGGCATCCTC
GGCAAGAGCT CCAAAGCCGG AATCTCCACG CTGCAGAACA ACGGTGCGAT CAAGGTCGAG
TACTCGTTCG ATCATCTGAA CACCTTAGCC GCCTTCAACG CCTACGCCTG GTGCGAGAAC
TCCACCCTGG GCGAAGGGAT ATCATGGACG AACGGGGTCA ACGCCATAGG CCAGTCCTCG
GTTGCAAGCG GCTACACCGT GTCGGGGATG TCGACTTCGA CGGCCCCGAT CACTATCCCA
TCGGCGACCC GCCCCCCCAC CGACCCCAAC AGGGATGGAC TGTATGAAGA CCTGAACGGA
GACGGCGTGG CCGACTTCAA CGACGTGGTC CTCTTCTTCA ACCAGATGGA CTGGATCGCG
GTGAACGAGC CGGTCACCGC CTTCGACTTC AATAAAAACG GCTCCGTCGA CTTCGATGAC
GTCGTTCTGC TCTTCAATAT GCTCTGA
|
|---|
| Protein sequence | METMPDTKHT IQTYLMVILL LTMALLVAPA GAELVQSNGT TSIGVDQTQE LKDTAAFSAN
KHVFFNVAND AGVKYNYDGA LYSGPSNTYY MKFDGGGLNA LHITSDPASP YGNVIASNAQ
SGTFFLSDTG GRGFDDDGIL MIAVKGDVPN DFRVHIRASG YTWTPATSGV YNPTIPSSVT
YQPVSLDETF TRDDLIYGPQ NWKPCSVANY PIYNGQDMTN TQDTYQMMFV DLKSGIIGKN
STAGAPALTD NGAIRVDYSF ENLNTFAAFD AFAWCSASNQ GQGITWTNEV AAAGSSSGSA
NGYTVTGVPR APVAAFTANT VSGPAPLSIG FTDQSTNTPT AWSWNFGDGT TSTEQNPSHT
YTTDGTYSVA LTASNAGGSN TVTRTSYITV RSTTPTTGPT TVPTTGNTTV PTTVTTIPTT
GTTTVATPTP TITTPPLAAN FTANVTAGQS PLAVQFTDST TGAVQSYFWQ FGDGGASYDR
NPVHTYTTAG TYTVSLIVSG PTGTQVKTNE QYITVTAVVP TMTTVAPLTN YHHNYLQVSN
TEGARFDLHN NGTYYQKSDG GGTNAIWMTG TPSVPQGQTI NTTNQSGVFY LTDTGGRGFD
DDGILMLAVN GTIPDDFKVH IRASGYAWTP IPNYLSPTAN DITYVDGSID EIFTKDDFIY
GPQIWKPAGQ ANYPIYNGQN LSDTQNTFRL MFIDLRAGIL GKSSKAGIST LQNNGAIKVE
YSFDHLNTLA AFNAYAWCEN STLGEGISWT NGVNAIGQSS VASGYTVSGM STSTAPITIP
SATRPPTDPN RDGLYEDLNG DGVADFNDVV LFFNQMDWIA VNEPVTAFDF NKNGSVDFDD
VVLLFNML
|
|---|
| |