| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1196 |
|---|
| Symbol | |
|---|
| ID | 7271474 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | + |
|---|
| Start bp | 1228918 |
|---|
| End bp | 1230627 |
|---|
| Gene Length | 1710 bp |
|---|
| Protein Length | 569 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643569833 |
|---|
| Product | TrkA-N domain protein |
|---|
| Protein accession | YP_002466257 |
|---|
| Protein GI | 219851825 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0569] K+ transport systems, NAD-binding component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATCGTCT CCACCCTCCG TTCCATCAGC CGCTGGATTA CCCGCACCGC TTCGACGCAG
CGGATCCGAA TATATCTGGT CATCTTTCTG GTTCAGATCA CCGCATACAC ACTGATATTT
CATGCCCTCT ACCCGCTGAC CGAGCAGAAG CCCATCTCCT GGGTGGGAGC CCTCTTCTTT
GTCATAGAGA CCATGACCAC GACCGGCTAT GGGGACCTCC TCCCGTTTTA TAACCAGATC
ACGCAGGCCT TCTCGATGGT GATGATCGTG ACCGGGGTGG TGATGATCTT CATGGTGATC
CCGTTGCTGT TCACCCCGTA CCTGACTCAA CTGGTCAAGC CCACACCCCC GCGTCGCCCT
CCTCACATCC TCCGGGATCA CGTAGTGATC ATGGGATACG ACGATCAGGC CAGGTCTCTG
ATCGAGAGCC TGATGATCGA GGAGATCGAC GTCGTGATCG TGGAGGCTGA CGAGGAGACT
GCGATGAGGG CCACGATGCG ATACCGAAGG CACGCATATG TGATCTGGGG GGAATACACC
CACCCAGCCA CCCATGCTCA TGCCTGTGTC AGCACTGCAC GTTATGTGAT CGTCAATGGG
GACGAGCGTT CGACGGCCAA CATCATCCTC GGGATTCGGG AGATCACAGA TGCCCATATC
ATTGCGGTCG TGGATAATCT CTCGTTTGAT CGGTATCTTC GGTATGCCGG TGCCGAGTAC
GTCTTCTCCC CGAAGAACTC GACCGGCAAG ATCCTGGCTC GCCATGCGCT CGTGACCCCG
GACATTGCGG CGGTCGTCGA TGTTATTGGT TCGGATCTCC CGTTTTCACT CGCCAATCCG
CAGAGTCAGT CGCTCTGGCT GATAAAGATC CCAATCCTTC CCGGGACACG GGTTGTGAAC
CGAACGATCC GAGAACTCGA TCTCTTTCAG CGTTATAACG TCAATATCGT GATCCTCTGG
CATGCCGGGG AATTCCTGCT CACCCCTGAT CCTGACAAGG TGATCGACAC CCGGACAATG
CTCTTTCTCA TCGGGAAGGC GGAGGATATC GCCAGCGCGA TAGAAGCACT CTTCCTGCCC
CCCGATGGAG ATAAAACCTT CGCCGTGATC GCCGGGTTTG GGGATGTCGG GGCAGCGGCC
TATAAGGAAC TGACCGGAAA GGGGATCGAG TGTGTGGTGG TCGATCAGCA CCCCCAGACA
AGCCCGTCGG TGATCGGTAA TGCAGAGGAC GAAGAGGTCC TCAAGAAGAC GCATCTTGAG
AAGGCACAGA TCTGCATCGT CGCTCTGAAC GATGACAGTG TCAACATCTT TACGACCCTG
ATGGCACGAA ATATCAACCC GGATCTGAAG ATCTTTGCCC GTGCCAATCA TGCAGGGTCT
GTCGACAAAC TTTACCGGGC AGGAGCCGAC TTTGTCGCGC TTCAGCCGAC GATCGGCGGG
CAGACGATAG CAGGGATTGT CCTCGCAGAT CATGTGAAGA TCCTGCTCGA TCTCCCTGGC
GGGCAGAAAG TGGTGATGAA GCACTGGATG AAGAGCCATG CTCGGACGGT CAACTGGCTC
GAGCGGAAGA GCGGCGTCCG GGTGCTCGGG GTCGAGGGCT CGAGCCGGTC CCTGGTCCGG
CCGAACGGTG ATGAAGTTCT GCTCGAAGGG GATAAGGTGA TTCTGATGGG TGAGGTTAAG
ATGTTGAAAC GGTGTATACA ATTAATGTAG
|
|---|
| Protein sequence | MIVSTLRSIS RWITRTASTQ RIRIYLVIFL VQITAYTLIF HALYPLTEQK PISWVGALFF
VIETMTTTGY GDLLPFYNQI TQAFSMVMIV TGVVMIFMVI PLLFTPYLTQ LVKPTPPRRP
PHILRDHVVI MGYDDQARSL IESLMIEEID VVIVEADEET AMRATMRYRR HAYVIWGEYT
HPATHAHACV STARYVIVNG DERSTANIIL GIREITDAHI IAVVDNLSFD RYLRYAGAEY
VFSPKNSTGK ILARHALVTP DIAAVVDVIG SDLPFSLANP QSQSLWLIKI PILPGTRVVN
RTIRELDLFQ RYNVNIVILW HAGEFLLTPD PDKVIDTRTM LFLIGKAEDI ASAIEALFLP
PDGDKTFAVI AGFGDVGAAA YKELTGKGIE CVVVDQHPQT SPSVIGNAED EEVLKKTHLE
KAQICIVALN DDSVNIFTTL MARNINPDLK IFARANHAGS VDKLYRAGAD FVALQPTIGG
QTIAGIVLAD HVKILLDLPG GQKVVMKHWM KSHARTVNWL ERKSGVRVLG VEGSSRSLVR
PNGDEVLLEG DKVILMGEVK MLKRCIQLM
|
|---|
| |