| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1083 |
|---|
| Symbol | |
|---|
| ID | 7270999 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | + |
|---|
| Start bp | 1121728 |
|---|
| End bp | 1122255 |
|---|
| Gene Length | 528 bp |
|---|
| Protein Length | 175 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643569718 |
|---|
| Product | nitroreductase |
|---|
| Protein accession | YP_002466152 |
|---|
| Protein GI | 219851720 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0778] Nitroreductase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000705077 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.264169 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACTCAT CTGAATTTCT CATATTCTTA CAGGATCGCG CCTCGGTCAG GGAGTTTCGG
GATTTCCCGC TCGCTGACGA CGAGATCGCC TATATGCTGG CCTGTGCACG GACCGCCCCG
ACTGCAGGGA ATCTGGAGTC CTGGGATCTG GTCCTGGTCA CCGACCCGGA ACAGCGGGCG
GCTCTCGCAG AGGCGGCCCA CGATCAGACT CAGATCGTTC AGGCAGGGGC GATCTTTGTG
GTCTGTTCCA ACTATGTGCG GGGAATGGCC CGATTTCAAG AGCGTGGGAT TTTATACGCG
CTCGAAGATG CGACGATTGT CTGCACCTAT CTGATGCTCG CGGCCCATGC GCTGCATCTG
CAGTCGTGCT GGACCGGTTC GTTCGATGAT GAAGATGTAC GGACTGTGCT CGATCTGCCC
CCCCACCTCC GTCCGGTCGC GCTGCTCGCG GTCGGGAACG GTGCCAAGGG AGGGGTCTCT
CCTGAACGGA GACCGGTCGA TGAGCATGTC CACCAGGATT TCTGGTAA
|
|---|
| Protein sequence | MDSSEFLIFL QDRASVREFR DFPLADDEIA YMLACARTAP TAGNLESWDL VLVTDPEQRA
ALAEAAHDQT QIVQAGAIFV VCSNYVRGMA RFQERGILYA LEDATIVCTY LMLAAHALHL
QSCWTGSFDD EDVRTVLDLP PHLRPVALLA VGNGAKGGVS PERRPVDEHV HQDFW
|
|---|
| |