Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mpal_1023 |
Symbol | secD |
ID | 7271757 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanosphaerula palustris E1-9c |
Kingdom | Archaea |
Replicon accession | NC_011832 |
Strand | + |
Start bp | 1050619 |
End bp | 1052142 |
Gene Length | 1524 bp |
Protein Length | 507 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 643569660 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_002466094 |
Protein GI | 219851662 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCAAGC GAGAGAAGAT TAAGAGAAAC AGTGAGACCG AAGCGGTTCC TATGACCCGG ACGGGGAAGG GGATCGATTG GAAGGCACTG CTGACCGACT GGCGTGTCGC ATTGGTGCTG ATACTGGTTG TGCTCTCAGT GATTGCAATC TATCCTCACT TCGACAGCGA TGGAAAACTC ACTACCGACA TACAATACGG CCTTGACCTG CAGGAAGGGG CTTGGATACA ACTTGAACTG AAGTCAGAGG TCGTCACGTT CGAGACCACC AACAAGACTG CAGACTTCAT CGCAGCCCTC GACAAGCAGC TCGATACCCA GGTGGAGTCG ACGGGAGCGA ACCAACTTGA GATTAGGAAG GCGTTCACGC AGGATCAATT GACCACAGCC TTCCAGGCGG CCGGTGGCAA ACTGGATACA TATCAACAGG GTGTCACCAA GTCGACAGCT GAGGATGTAA AACGGATCCT TGAGAACAAG ATCAATAGCC TCGGCACCAA GGACGCCAAG GTGAACACCC TCTCCGGCCT GAACGGTGTC ACCCAGTATA TTCGGGTTGA ACTCGCTGGC GTGGATATGA ACACGGCTCA GGAGATCGTC GGAAAGCAGG GTAAGTTTGA GATCAGGATC AACACCACAG ATAACCAGTC TGAGCATGTG CTCTATGGTG ATTCGATCAC CAGCGTCTCG ATGCCCTCAC AGAGTCCGGT TGGCTCGGGC AACTGGGGTG TCGGGTTCAC GCTCTCTGAT GCCGGCGCGG CCGCGTTCAG AAACGGTTCG ATCCAGTATG GGGCCGTCGA TGACCCATCC AACCACAACC TGGTGATGAT ACTCGACAAT CAGTCGGTAT ACAGTGCCCC GCTCAGCAGC GACCTTGCTG CCAAACTCCG TGCATCGCCG AGTGTCAAAG AACTCTTTGC CTCGACCGGT TCCGGAACAG ATGGGCAGAA CTCAGCGCAG AACCTGGAGA TCCACCTCCG TGCCGGGGCC CTCCCGGTCG ATGTCTCGGT CGCCGGGTCT GGTTCAGTTT CTGCCTCCCT TGGCGAGCAC TTCAAGCTGA TGTCCATTCT GGCCGGGCTC TTCGCCTTGA TCACTGTCGG GCTGGTCATC TTCTTCCGGT ACCGGGAACC CCTGATTGTG CTCCCGATGA TCGGGACCAA CATGGCAGAG ATCGTTATCC TGCTCGGGAT CGCCCGGTTC ACACAGCAGC TGGACCTGGC AACAATTGCA GGGTTGATTG CTGTGCTGGG TACAGGGATC GACCAGTTGA TCATCATCAC TGACGAGGTG CTCCATGAGG GGAGGGTTCC TTCGCCGAAC CTGTACCTGA AACGGCTCTC ACGTGCGCTT GGGATCATCG TCATATCGGC GCTGACGGTC TTCATGGCCA TGCTCCCACT GGCGGTGATG TCCCTCTCGA CATTACGCGG GTTTGCGATC ATCACGATCC TCGGTGTGTT GATTGGTGTG ATCATCACCC GGCCGGCATA TGGGCGGATT ATCATGGCGA TTCTGTCACG ATAA
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Protein sequence | MTKREKIKRN SETEAVPMTR TGKGIDWKAL LTDWRVALVL ILVVLSVIAI YPHFDSDGKL TTDIQYGLDL QEGAWIQLEL KSEVVTFETT NKTADFIAAL DKQLDTQVES TGANQLEIRK AFTQDQLTTA FQAAGGKLDT YQQGVTKSTA EDVKRILENK INSLGTKDAK VNTLSGLNGV TQYIRVELAG VDMNTAQEIV GKQGKFEIRI NTTDNQSEHV LYGDSITSVS MPSQSPVGSG NWGVGFTLSD AGAAAFRNGS IQYGAVDDPS NHNLVMILDN QSVYSAPLSS DLAAKLRASP SVKELFASTG SGTDGQNSAQ NLEIHLRAGA LPVDVSVAGS GSVSASLGEH FKLMSILAGL FALITVGLVI FFRYREPLIV LPMIGTNMAE IVILLGIARF TQQLDLATIA GLIAVLGTGI DQLIIITDEV LHEGRVPSPN LYLKRLSRAL GIIVISALTV FMAMLPLAVM SLSTLRGFAI ITILGVLIGV IITRPAYGRI IMAILSR
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