Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mpal_0144 |
Symbol | |
ID | 7270914 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanosphaerula palustris E1-9c |
Kingdom | Archaea |
Replicon accession | NC_011832 |
Strand | - |
Start bp | 169487 |
End bp | 171298 |
Gene Length | 1812 bp |
Protein Length | 603 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 643568802 |
Product | ABC-2 type transporter |
Protein accession | YP_002465260 |
Protein GI | 219850828 |
COG category | [C] Energy production and conversion [P] Inorganic ion transport and metabolism |
COG ID | [COG1668] ABC-type Na+ efflux pump, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0287244 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00361496 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCACCTGC TCGCTCAGAC CCTGACCATC GCCCGCTGGG AGGTGAAGCG ATCGCTGACG ATGATGAGAA GGGATGTGCT TCCCCTCTCA ATCGTGCTCT TCATCCTGCT GATCGCCGTC ACCGGGTTCG CCGCCCAGAA CGGAATGCAC CTGCAGGACA AACTGTACAC GATCGGGGTC GACGACCCCG TGCTGGCCAG TGTCTTCGCC GGGGATACCC GGTTCACAGT TGCAACGCTG CCGACCGATA CCGTGCTGAC GGGCACCGGG GGGTACGACC TGGTCGTCAC CCACGGGCAG GCGACCTCAG CCCCGACTCA GCGTGGCCGG GCTGCGCTGC TGACCCTGTC CCGGGATTAC AGTCGGTACG TGAACGCAGT CTACACCAGT CAGCCGGACC TCTTCGCCGC ATACCCGCTC TGGATCGACC TGCAGAATGT GAAGAGTGAA CTCGACTTTG TCGCCACCCA GTCCGGGCAG CAGGTGGCTG CACCACCCCC CGCAGGTCAG CCGGTGCCTG AAGGGACCGT GGTGCAGGTC GCCACCCCGC CGGCAGCGAT CGATATCGCC CCGGACCAGC TTCGGCAGCA GGTGGCCAGC AGTTCCGACC AGAACGATCA GGTGGCCAGG TACTCGAACA TCCTCACATC GAAGGGAGTG CAGCAGGAGG CGAACGTCAA GATACCCTCG CAGATCTCCC CGCCCCTGCC GTTCGACTCG ATCATCCTGA TCTTCGTCTT CATCTTCCCG CTGTACTTCA CCTCCCAGTT CTTCATGATG AGCATCATGA ACGAACGGGT GGAGCGGCGG GGGGAACCGC TCCTCTCGAC ACCGATCCAC CCGGTGGCGA TCATCCTTGG CAAGGCGCTG CCCTACCTGC TCCTGATGTT CCTGGCGGCG ACCGTGCTCC TGCTCATACT GCACGCCTCC CTCGTGATCC TGGCCGCCCT CTTCCCGGTG ATCCTCTTCT TCCTGGCCAG CGCGATGATC ATCGGGATGA TCGCACGGAG TTACAAGGAA CTCTCGTTCA TCTCAATCTT CTTCTCGACG ATCGCGACGT CATACCTCTT CTTCCCCTCG ATCTTCGCAA ACGTCCATGT CGTCTCGCTC ATTTCGCCGC TGACGCTGAT CGTCCTCTCG ATGCAGGGGG ATGGGTTCAC GCTGGCAGAC TACGGCTACT CGACGATCCT CTTCTACCTG ACCAGCCTGG TCCTCTTCTA CATCGGGGTC GTGAACTTCG GCGAGGAGCA GCTCTTCTCG CAGCACCGGT TGGTCCCGCG GGTCAGAGAG TTCATCGGAA CCGCACTCTC AAAGAAACGG CCGTTCCTCT CGCTCTTCCT GCTGAACCTG CTCCTGATCC CGTTCGTCTT CATGGCGCAG ATGATGACGC TCGTCCTCTT CTTCAACCTC CCGATGCCGT ACTCGCTGGT GCTGTTGATC ATCGCCGCGG CCTTCATCGA GGAACTGGTA AAATCGATCG GGCTCGTGGC GTTCCGGACC GTCCTCCCGG ACCTCTTCAC CTGGAGACGG CTCATCCCGG CCGCGGCTGT CACAGCCATC GGCTTCCTGG TCGGCGAGAA ACTGCTGCTG CTGGTGACGC TGACCCAGAT CACCGAGTCG GTCTTCGGGT CGGTCCTCTT CACCTCGCTG CAGGTGCTCT GGATGCCGTT TCTCCTCCAC TTCGCAGGGG TGTTGATCGT CGGAGTATCG CTGAAGGTGG GTGGAAAACG TGGGTACATC CCCGGACTGG TGCTGGCGAC CGCAGTCCAT ACCCTCTATA ACCTGGTACT GATCATGGGG TGGTCACTGT GA
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Protein sequence | MHLLAQTLTI ARWEVKRSLT MMRRDVLPLS IVLFILLIAV TGFAAQNGMH LQDKLYTIGV DDPVLASVFA GDTRFTVATL PTDTVLTGTG GYDLVVTHGQ ATSAPTQRGR AALLTLSRDY SRYVNAVYTS QPDLFAAYPL WIDLQNVKSE LDFVATQSGQ QVAAPPPAGQ PVPEGTVVQV ATPPAAIDIA PDQLRQQVAS SSDQNDQVAR YSNILTSKGV QQEANVKIPS QISPPLPFDS IILIFVFIFP LYFTSQFFMM SIMNERVERR GEPLLSTPIH PVAIILGKAL PYLLLMFLAA TVLLLILHAS LVILAALFPV ILFFLASAMI IGMIARSYKE LSFISIFFST IATSYLFFPS IFANVHVVSL ISPLTLIVLS MQGDGFTLAD YGYSTILFYL TSLVLFYIGV VNFGEEQLFS QHRLVPRVRE FIGTALSKKR PFLSLFLLNL LLIPFVFMAQ MMTLVLFFNL PMPYSLVLLI IAAAFIEELV KSIGLVAFRT VLPDLFTWRR LIPAAAVTAI GFLVGEKLLL LVTLTQITES VFGSVLFTSL QVLWMPFLLH FAGVLIVGVS LKVGGKRGYI PGLVLATAVH TLYNLVLIMG WSL
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