| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_0141 |
|---|
| Symbol | |
|---|
| ID | 7270911 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 165399 |
|---|
| End bp | 167912 |
|---|
| Gene Length | 2514 bp |
|---|
| Protein Length | 837 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643568799 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_002465257 |
|---|
| Protein GI | 219850825 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00355903 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGACAATGG ACTCCCTCCT GTATGTGGAT GACGAGCCGA CCCTGCTTGA GATCGGTACG
ATCTTCCTCG AACGGACAGG AGAATTTTCA GTTACCACTG CCACAGGGGT CGAGGAGGCA
CTGAGATCTC TGGAGAGCAC TTCGTGTGAT CTGGTCATCT CCGACTACCA GATGCCAGAG
CGGGACGGTA TCGAACTGCT ACAGGAGATC CGGAGCAGGT ATCCTGACCT CCCGTTCATC
CTCTTCACCG GGCGGGGACG CGAGGAGGTG GCGATCAGGG CCTTTGACCT GGGGGCGGAC
TTCTACCTTC AGAAGGGAGG GGACCCCCTG GCCCAGTTCG CCGAACTCAT CCAGAAGGTC
CGCCAGGCTA TCCGACGCCG GAGGGCCGAG GATGCCCTGA AGCGGCGGGA ACAACAGCTG
AACGCGATGG CCACCAACAT CCCCGGCGTC GTCTACCGAC TCTCGGTGAA CCCTGACGGG
ACGATCAGTT TCAATTATAT CAGTGAGCGA AGCCGGCAGA TCCTCGGCCT TGAGAACGAA
CCCACCACCT TCTTTGACCA GCTCACTGAA CAGATCGTGC AGGGGGACCA GGAACGGTTT
ATAAGTTCAG TTCGGCACGC CATCAGCACC AGAACCATCT GGGAGTTTGA AGGGCAGTAT
ATCAAGCCCT CAGGGAAGAA GATCTGGATA AGTGCCGTCT CCAACCCATT GGTCGAGATG
GGCCGGCTTG TCTTCGATGG CGTCATATTC AACAATACAG AGCGGAAGAG GGCCGAAGAA
GCTCGTAGAC TGTCAGAGGA GTATTACCGT GCTCTCTTTC AGTATACCGA GGCGGCGACG
GTCATCATCG AAGAGGACGG CATCATCTCG CGGGCCAACG AAGCCTTTGC AGATCTCTGG
GGTGAGCCTT CCCATGCGAT AGAAGGAACC CTCAGGTGGA CTGAGTTCAT CGCCCTGGAT
GACCTGGAGC TTGTAAAGGA TCTTCACCAC CACCACCACC GCAGAGTCAG CCCCGATAAG
ATCCCTGCTA AATACGGGTT CCGGTTCGTC ACCAGTCAGG GGAGCATCCG CAACGTTCTC
ATCCATTTCG GGAGCATCCC GGGCACCGGA AAGAGTGTCG TCTCTCTGCT CGACATCACC
GAACAGAAGC TGGCACAGGA AGCACTCATC CTCGACGAGA AACGGCTCGA AGCACTGGTC
CGGCTCAACG AACAGGAGAC GGCCACGATC CATGAACTGG TAACCTTTGC GATGGATGAG
GCGGTCCGTC TTACCAGGAG CACCATCGGC TATATCGCAT TCTACGATGA GGACGAGCGG
ATCCTGACGA TGTATGCATG GTCAAAGTCT GCGATGGAGG AGTGCAGAGT TGCAGAGCGA
CCGATCCGGT ACCCGATCGA TGAAACCGGC CTCTGGGGGG AGGCGGTCAG GCAGCGGTCT
CCGGTCATCA CCAACGATTA CCAGGCAGAG AGCAGTCTGA AGAAGGGGCT GCCCAGGGGT
CACGTTCCCC TGACCTGTCA CATGAACGTA CCGATCTTCG ATGGGGATCG GATCGTGATC
GTGGTCGGGG TCGGCAACAA ACCATCTGAC TACGATGACG CGGATGTCCG CCAGCTGACG
CTGTTGATGG GTGGTATGTG GCGGATCATT CAACGAAAGA GGACAAGAGA AGCCCTGCGG
CAGAGAAATA AGGAACTCCG TGCCCAGAAT GAGATACTGG CCAAACACGA TCGGGTACTC
CGCGAGAGTG AGACCAGGTT CCGACAACTG GCCGAAGCGA CAGTTGAAGG GATCGTCATC
CACGAATCAG GCATCGTCAG AGACCTCAAT GAACGGGCCT GCGAACTCTT CGGGTTCTCG
CATGATGAGA TGATCGGCAG AGACATGCTC ACCCTGGTCG CCCCAGAGTT TGTTGAACTG
ATCCGGGAGA AGGTGGCTAT CGCCTCGTAC GAACCGTACG AGGCGCAGAG ACTGCGCAGA
GACGGCTCGA GGTTCTGGGC TGATATGCAC ACCCACCAGA TCACCGTCGA CGGCGAGATA
CTTAGGATCA CCACATACTG GGATATCACC GGGCGCAAAG ATGCCGAAGA GGTGATTCGT
GCAGCACATC AGCACCTGGC CGCACAGGAG AAGGAACTCC GCACCCGGAT CGAGATGCTC
AGAGAGAACG AACTGCAGCT CCGATCCCTG ATCGACGAGA GCCGCGATGG TCTCTTCATC
CTCGATACTG CAGGGATCAT CACCTTCGCC AACCGGACGC TCGCCCGCCT CTTTGGTCAG
GTGGTGCCGG ATGATATCAT CGGACAGTCA TTCCTCAGGT ATATCGTCAC CAGTGATCGG
GAATGGGTCG GTGCATACAT CAGAAGATTG ATCGATGGTG GGACCTCCTC ACAGGGGGAG
GCACTCGGGA TCGGAGTGCT GCGGATCGAT GGCAGCCAGT GCACCGCGGA GGTGAACGCA
TCCCCGATCA TCGAAGAAGG CAGGTCCACC AGGATACAGG GAAGTATCCG GTAG
|
|---|
| Protein sequence | MTMDSLLYVD DEPTLLEIGT IFLERTGEFS VTTATGVEEA LRSLESTSCD LVISDYQMPE
RDGIELLQEI RSRYPDLPFI LFTGRGREEV AIRAFDLGAD FYLQKGGDPL AQFAELIQKV
RQAIRRRRAE DALKRREQQL NAMATNIPGV VYRLSVNPDG TISFNYISER SRQILGLENE
PTTFFDQLTE QIVQGDQERF ISSVRHAIST RTIWEFEGQY IKPSGKKIWI SAVSNPLVEM
GRLVFDGVIF NNTERKRAEE ARRLSEEYYR ALFQYTEAAT VIIEEDGIIS RANEAFADLW
GEPSHAIEGT LRWTEFIALD DLELVKDLHH HHHRRVSPDK IPAKYGFRFV TSQGSIRNVL
IHFGSIPGTG KSVVSLLDIT EQKLAQEALI LDEKRLEALV RLNEQETATI HELVTFAMDE
AVRLTRSTIG YIAFYDEDER ILTMYAWSKS AMEECRVAER PIRYPIDETG LWGEAVRQRS
PVITNDYQAE SSLKKGLPRG HVPLTCHMNV PIFDGDRIVI VVGVGNKPSD YDDADVRQLT
LLMGGMWRII QRKRTREALR QRNKELRAQN EILAKHDRVL RESETRFRQL AEATVEGIVI
HESGIVRDLN ERACELFGFS HDEMIGRDML TLVAPEFVEL IREKVAIASY EPYEAQRLRR
DGSRFWADMH THQITVDGEI LRITTYWDIT GRKDAEEVIR AAHQHLAAQE KELRTRIEML
RENELQLRSL IDESRDGLFI LDTAGIITFA NRTLARLFGQ VVPDDIIGQS FLRYIVTSDR
EWVGAYIRRL IDGGTSSQGE ALGIGVLRID GSQCTAEVNA SPIIEEGRST RIQGSIR
|
|---|
| |