| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_0057 |
|---|
| Symbol | |
|---|
| ID | 7272226 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | + |
|---|
| Start bp | 59946 |
|---|
| End bp | 60947 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 643568714 |
|---|
| Product | flap endonuclease-1 |
|---|
| Protein accession | YP_002465174 |
|---|
| Protein GI | 219850742 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI) |
|---|
| TIGRFAM ID | [TIGR03674] flap structure-specific endonuclease |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTGTTG CTCTCCGTGA GGTGCTGACC GAGTACAAGC ATCCCAGAAC CTGGGAGACC
CTGGCCGGGA CCGCCGCCAT CGACGGGAAC AATGCCCTTT ACCAGTTCCT CTCGATCATC
CGGCAACCGG ACGGCACCCC GCTGATGAAC AGCGAAGGGA GGATCACCTC TCACCTCTCC
GGGGTCTTCT TCCGCACGCT CCGGTTCCTT GAGAAGGGGA TCCGCCCGGT GTATATCTTC
GACGGCAAAC CCCCTGCTCT GAAACAGGAG ACGATCGAGA GCCGGCGGGA GGTGAGACGG
GAGGCCGGCG TCCAGTGGGA GGCTGCTCTG GCCCGGGGGG ACCAGGAGGA GGCGTACAAA
CAGGCCCGTG CCTCCTCCCG GGTCACTCCT GAGATCATCG CCACCTCAAA AGAGCTGCTG
ACCCTGATGG GCGTCCCCTG CGTGCAGGCT CCGTCCGAGG GGGAGGCCCA GGCCGCCTCG
ATGGCCGCTT CCGGGGCGGT CACCTACGCC GTCTCGCAGG ACTACGACTC CCTCCTCTTC
GGAGCCCCGC TGCTGGTCAG GAATCTGACC GTCTCGAGCA AACGGCGGGT GCAGGGGAGG
ACGATCGCAG TCCAGCCCGA GTCGATCCGT CTCGATGAGG TGCTCGGGGG ACTCGGGATC
ACCCGTGAAC AGTTGATTGA GGCCGGCATT CTGATCGGCA CCGACTTCAA CCCCGGCATT
AGGGGAGTCG GACCGAAGAC AGCGCTGAAG ATCGTGAAGA AGGACGGGTT CGCCGACATG
ATCGCCGAGA AGTTACCGGA CTTCGACCCG TCCCCGATCC TACAGTTCTT CCGCTCCCCG
CCGGTGATCG CCAACCTCTC CCTGGACTGG CAGCCGCCGG ACCAGGCAGG GATCGAGGAT
CTCCTCTGTG GGGAGTACGG GTTTGCAACA GAACGGGTAA GAACTGCCCT TCAGAAGATC
AGCGGCCCTC CCGGGCAGAA GACCCTGGAC CGCTGGTTCT GA
|
|---|
| Protein sequence | MGVALREVLT EYKHPRTWET LAGTAAIDGN NALYQFLSII RQPDGTPLMN SEGRITSHLS
GVFFRTLRFL EKGIRPVYIF DGKPPALKQE TIESRREVRR EAGVQWEAAL ARGDQEEAYK
QARASSRVTP EIIATSKELL TLMGVPCVQA PSEGEAQAAS MAASGAVTYA VSQDYDSLLF
GAPLLVRNLT VSSKRRVQGR TIAVQPESIR LDEVLGGLGI TREQLIEAGI LIGTDFNPGI
RGVGPKTALK IVKKDGFADM IAEKLPDFDP SPILQFFRSP PVIANLSLDW QPPDQAGIED
LLCGEYGFAT ERVRTALQKI SGPPGQKTLD RWF
|
|---|
| |