Gene Mnod_3079 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMnod_3079 
Symbol 
ID7304006 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium nodulans ORS 2060 
KingdomBacteria 
Replicon accessionNC_011894 
Strand
Start bp3178584 
End bp3179603 
Gene Length1020 bp 
Protein Length339 aa 
Translation table11 
GC content60% 
IMG OID643600778 
ProductTRAP dicarboxylate transporter, DctP subunit 
Protein accessionYP_002498323 
Protein GI220923021 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID[TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATCTGT CCCGTCGTCG TCTGCTGGCC TTCGGCTCCT CGGCCGTTGT GGGCAGCCTG 
ATCGGGGCGC CGCGGATCGT CCGCGCCCAG GCCGCCGAAT TCACCTACAA GTACGCCAAC
AATCTGCCCG ATACGCACCC CATGAACGTG CGTGCCCGTG AGATGGCGGC GGCCATCAAG
GCGGAAACCA ACGGCCGCTT CGATCTGCAG ATCTTTCCGT CGAGCCAGCT CGGCTCTGAC
ACCGACACCT TGAGCCAGCT CCGGGCTGGT GGCGTCGAGT TCTTCACACT GTCACCGCTG
ATCCTGTCGA TCCTGGTTCC CGCCGCCTCG ATCAGCGGGA TGGGGTTCGC CTTCCCGGAC
TACGACGCGG TCTGGAAAGC GATGGATGGC GACCTCGGCG CGCATGTCCG GCAGCAGATT
GCCAAGTCCG GGCTCTTCGC CATGGAGAAA ATCTGGGACA ACGGCTTCCG TCAGACGACC
TCATCGTCCC GCCAAATCAA TACACCCGAC GATCTGCGCG GTTTCAAGAT CCGGGTTCCC
CCTTCGCCGT TGTGGACGTC GATGTACAAG GCGTTCGAGG CTGCTCCGAC GTCGATCAAT
TTCAACGAAG TTTATTCGTC GTTGCAAACA AAGATCGTTG ACGGCCAAGA GAATCCGTTG
GCGATCATTG CTACCGCGAA ACTGAATGAG GTGCAGAAGT ACTGCTCTCT GACGAACCAC
ATGTGGGACG GGTTCTGGTT CCTGGCGAAC CGGCGAGCCT GGGAACGGCT GCCGAAGGAT
GTGCAGACCG TCGTTGCCAA GCACATCAAC GAAGCCGGCC AGAAAGAGCG CGAAGACGTT
GCTCAACTTA ACGCCAAGCT CCAGCAGGAA CTGACTGCCA AAGGCTTGGT CTTCAACAGT
CCAGATCAGG CTCCTTTCAG AGACAAGCTG CGCAAGGCTG GGTTCTACGC CGAGTGGAAG
GGTCGCTACG GACAGGAGGC CTGGACAATC CTCGAGAAGA CGACCGGAAA GCTGGTATGA
 
Protein sequence
MHLSRRRLLA FGSSAVVGSL IGAPRIVRAQ AAEFTYKYAN NLPDTHPMNV RAREMAAAIK 
AETNGRFDLQ IFPSSQLGSD TDTLSQLRAG GVEFFTLSPL ILSILVPAAS ISGMGFAFPD
YDAVWKAMDG DLGAHVRQQI AKSGLFAMEK IWDNGFRQTT SSSRQINTPD DLRGFKIRVP
PSPLWTSMYK AFEAAPTSIN FNEVYSSLQT KIVDGQENPL AIIATAKLNE VQKYCSLTNH
MWDGFWFLAN RRAWERLPKD VQTVVAKHIN EAGQKEREDV AQLNAKLQQE LTAKGLVFNS
PDQAPFRDKL RKAGFYAEWK GRYGQEAWTI LEKTTGKLV