Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmwyl1_1709 |
Symbol | |
ID | 5366532 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Marinomonas sp. MWYL1 |
Kingdom | Bacteria |
Replicon accession | NC_009654 |
Strand | - |
Start bp | 1928737 |
End bp | 1932150 |
Gene Length | 3414 bp |
Protein Length | 1137 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640804050 |
Product | transcription-repair coupling factor |
Protein accession | YP_001340570 |
Protein GI | 152995735 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.517079 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0571023 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAGAAA CCGTATCAAT CACACTAAAA CCAGGCTTCA AGAATTTAAT TAATGGCCTA GACGGCAGCA GAAAAGCATT ACAGCTGTTA GCAATAGCCT CTCAACACAA ACTGCCAACT CTTTACATGG CCAATACTGT TGCCGAATTA AATGAGCTTG AAGATGAAAT ACAGTTTCTA AATCAAAACA AAAGAGAAAT ATTGAGGTTT AGCGATTGGG AGACATTACC ATACGATGCC TTTTCACCTC ACCAAGACAT TATTTCTCAA CGTTTAGAAA CACTAGCTAA ACTAACAGAA ACTAAAAACC CCATTGTTCT TACAACAGTT GCCTCTTGTT TAACACGCCT TTGCCCAACG CAGCACCTTG ATGCCCAACG CTTTCATTTA GAAGAAGGCC AAGAACTTCC CCTTGAGCAA CTTTCCAGAA AGCTTTCCAA TGCCGGCTAC TTAAATGTTG AAAATGTCCA TGAGCATGGT GAATACGCTA TTCGCGGCGC TTTGATGGAT GTTTTTCCTA TGGGCGCAGA AAACCCAATT AGAATAGATT GGTTCGATAA CGAAATTGAA TCCATTAGAT GGTTTGACTC GGAAACACAG CGCAGCATCA GCAAAGTAAC AGAAATAAAA ATGCTACCCG CAAAAGAGTT TCCAACCACC CCTCAAGGGA TTCAACAATT TCGTCAAGCT TTTAGAGAGC GCTTTGAAAC AAACCCTCTT TCCAGCCCAA TTTATCAAGA TATCTCAAGC GGAATCATTC CAGCTGGTAT CGAATATTAT TTACCGCTAT TTTTCGAACA AACCGCCAGC GTTTTTGACT ACCTACCAAG CGACACTCTA ATCATTAGAT CGGATACTTT TAACGATCAG TTAGCCAGCA TCCAGCTTGA TTTTCGTAGC CGTCATGAAT CCCTAAATTA CAACATCGAG CGCCCTATTT TAAAGCCCGA TGAAATTTGT CTACGTGAAG ATGAGCTCTT TGCAAAGCTC AATCAATATA CCAACATCAT CTTTTCTGCC ACAGGTGAGC ACCCAGCCTA CCAAGCACTT GATACAGTTA AAATTGACTC TAAAGCCGCT CACCCCCTTG GCAAGCTGCA AAATTTCTTA GCCAATACAA GCGCTAGAGT CTTAATCGTC GCCGAGTCTG CAGGTCGTCG AGAAGCGCTA CTTGAATTAC TAAAGAAACA CAACATAAAA CCTAAACAAG TTGATGGCTG GGAAGCCTTC AGTAAATCCA CAAAGACACT TGCCATCACA GAAGGCAATA TCGGTCGTGG TTTTATTATC AACAATGAAT TAGCCCTCAT TCCTGAAAGC GAAATACTCG GCGAACGCGT TTCACAACAC CGTCGACGCA ACAAACAAAA TAACATCAGT GAAGATGCCA TTATCCGCAA CCTCACGGAG CTAAGATTAA ACGCTCCAGT TGTCCACATT GATCATGGAG TTGGGCGTTA TCTTGGGCTA ACTAATTTAG AAATAGATGG TCAAGAAACC GAACTTCTTA CCCTAGGTTA TGCCAATGAT GCCAAACTGT ATGTCCCTGT TTCCTCATTA CAATTAATTT CTCGCTATAC CGGAGCCGAT GAGGATACAG CTCCACTACA CAAACTAGGT ACAGACAAGT GGAGTGCAGC CAAACAAAAA GCGGCAGAGA AAGCCCGCGA TACCGCCGCT GAATTGCTTG AAATTTACGC AAAACGTGAA GCCAGAGTAG GACACGCTTT CGCTAAACCC GATGACCAAT ACGAACTCTT TTCAGCTGGT TTCCCATTCG AAGAAACACC TGACCAACAA ATGGCGATTG ATGCGGTCAT GGCCGATATG TCCGCTAAAA AACCTATGGA CCGATTAGTT TGTGGCGATG TAGGTTTTGG TAAAACAGAA GTGGCCATGC GAGCGGCTTT TCTTGCTGTG CAAGATGGTA AACAAGTGGC AGTATTAGTT CCCACCACCC TACTAGCCCA ACAACATTAT GAAAATTTCT GCGATCGTTT TGCTGATTGG CCTGTAGAAA TTGAACTCTT GTCACGATTC CGCTCTGGCA AACAATCCAA CACATCTATT GACCGCTTAG AGTCTGGCAA AGCAGACATA GTCGTTGGGA CTCATAAGCT CATACAAAGT GACATCAAGT TTGCCAACTT AGGTCTAGTA ATCATTGACG AAGAACACCG CTTTGGCGTC AAACAAAAAG AACAGTTCAA AGCCTTGCGA GCAGAGGTGG ATATTTTAAC CCTCACCGCA ACCCCTATCC CTCGTACATT AAATATGTCT TTGTCTGGTA TTCGCGATTT ATCCATTATC GCCACACCGC CTGCCAAACG CCTGTCAGTG AAAACCTTCG TAAAACAAAA AGACGACCAC CAAACAAAAG AAGCCATCTT GCGAGAACTT CACCGTGGCG GCCAAGTGTA TTATTTGCAT AACGAAGTAC AAACCATTCA AAAAACGGCT GAGGAACTGG AAGAACTCAT TCCTGAGGCA CGTGTTATCG TTGGCCATGG ACAGATGCGT GAAAGAGAGC TGGAACAAGT CATGTCTGAC TTTTACCACA AAAGAGCCAA CGTACTCGTC TGTTCTACCA TTATAGAAAC AGGTATCGAC ATACCAAACG CCAACACCAT CATTATTGAA CGAGCCGATA AATTTGGCTT AGCCCAACTC CATCAATTAC GTGGTCGAGT TGGTCGCTCT CACCATCAAG CCTATGCATA TCTATTAACC CCAAATGATC GTAAAGTCAC GGGCGACGCA GAAAAACGCT TAGAAGCTAT TACACTGGCA GACACGCTTG GTGCGGGATT CACATTAGCA ACTCACGATT TAGAAATCCG CGGCACCGGC GAATTATTAG GCGACGGCCA AAGTGGTCAC ATTGAGCATG TAGGCTTCTC TCTCTTCATG GACATGCTAG ACAGAGCAGT AAAATCCCTG AAAAACGGCG AATCTCCTGA CATAGACATT ACATCTCCGG CGCAAACCGA AGTAAACTTA CGAGTACCTG CACTCATTCC AGAAGATTAT TTAGGTGATG TACATTCACG TTTGATTCTG TATAAACGTA TTGCCAGCGC AAAAAACAGC GAAGAACTAA AAGATCTTCA AGTAGAAATG ATTGACCGCT TTGGACTACT GCCTGACGCA ACGAAAAATC TATTCCGTCA AACAGAACTG AAACTCAAAG CAGAAAGCCT TGGGATTAAT AAAATTGAGG CCAATGCAAA AGAAGGCAAG ATTTTCTTCA ACAGCAAAAC ACCGGTCGAC CCCATGAAGC TTATTCGACT AATCCAGACA AAACCCGACA CTTACAAACT GGTTGGCTCT GATACATTGA AATTTTTAGC TCCAATGAAC AGCGCAGAAG AGCGTTTCCA ACAAACAACA ATGACTTTGG AATTATTACA TTGA
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Protein sequence | MSETVSITLK PGFKNLINGL DGSRKALQLL AIASQHKLPT LYMANTVAEL NELEDEIQFL NQNKREILRF SDWETLPYDA FSPHQDIISQ RLETLAKLTE TKNPIVLTTV ASCLTRLCPT QHLDAQRFHL EEGQELPLEQ LSRKLSNAGY LNVENVHEHG EYAIRGALMD VFPMGAENPI RIDWFDNEIE SIRWFDSETQ RSISKVTEIK MLPAKEFPTT PQGIQQFRQA FRERFETNPL SSPIYQDISS GIIPAGIEYY LPLFFEQTAS VFDYLPSDTL IIRSDTFNDQ LASIQLDFRS RHESLNYNIE RPILKPDEIC LREDELFAKL NQYTNIIFSA TGEHPAYQAL DTVKIDSKAA HPLGKLQNFL ANTSARVLIV AESAGRREAL LELLKKHNIK PKQVDGWEAF SKSTKTLAIT EGNIGRGFII NNELALIPES EILGERVSQH RRRNKQNNIS EDAIIRNLTE LRLNAPVVHI DHGVGRYLGL TNLEIDGQET ELLTLGYAND AKLYVPVSSL QLISRYTGAD EDTAPLHKLG TDKWSAAKQK AAEKARDTAA ELLEIYAKRE ARVGHAFAKP DDQYELFSAG FPFEETPDQQ MAIDAVMADM SAKKPMDRLV CGDVGFGKTE VAMRAAFLAV QDGKQVAVLV PTTLLAQQHY ENFCDRFADW PVEIELLSRF RSGKQSNTSI DRLESGKADI VVGTHKLIQS DIKFANLGLV IIDEEHRFGV KQKEQFKALR AEVDILTLTA TPIPRTLNMS LSGIRDLSII ATPPAKRLSV KTFVKQKDDH QTKEAILREL HRGGQVYYLH NEVQTIQKTA EELEELIPEA RVIVGHGQMR ERELEQVMSD FYHKRANVLV CSTIIETGID IPNANTIIIE RADKFGLAQL HQLRGRVGRS HHQAYAYLLT PNDRKVTGDA EKRLEAITLA DTLGAGFTLA THDLEIRGTG ELLGDGQSGH IEHVGFSLFM DMLDRAVKSL KNGESPDIDI TSPAQTEVNL RVPALIPEDY LGDVHSRLIL YKRIASAKNS EELKDLQVEM IDRFGLLPDA TKNLFRQTEL KLKAESLGIN KIEANAKEGK IFFNSKTPVD PMKLIRLIQT KPDTYKLVGS DTLKFLAPMN SAEERFQQTT MTLELLH
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