Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmcs_4390 |
Symbol | |
ID | 4113219 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Mycobacterium sp. MCS |
Kingdom | Bacteria |
Replicon accession | NC_008146 |
Strand | - |
Start bp | 4666766 |
End bp | 4668799 |
Gene Length | 2034 bp |
Protein Length | 677 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 638033536 |
Product | short chain dehydrogenase |
Protein accession | YP_641550 |
Protein GI | 108801353 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only [S] Function unknown |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [COG3347] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR02632] rhamnulose-1-phosphate aldolase/alcohol dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0639544 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTGACA CCGTGAGAGA ACTGATCGAC CGCTCCAACC GTCTGGGCGC CGACCCGAAG AACACCAACT ACGCCGGCGG CAACACCTCG GCCAAGGGCA CCGAGACCGA CCCGGTCACC GGTGCGCCCG TGGAGTTGTT GTGGGTCAAG GGTTCCGGCG GTGACCTCGG CACGTTGACC GAGAAGGGGC TGGCCGTGCT GCGGCTGGAT CGGATGCGCG CGCTCGTCGA CGTCTACCCG GGTGTCGAGC GTGAGGACGA GATGGTCGCC GCGTTCGACT ACTGCCTGCA CGGCCGCGGC GGCGCGGCAC CGTCGATCGA CACCGCCATG CACGGTCTGG TCGACGCCGC CCACGTCGAC CACCTGCACC CCGACTCGGG TATCGCGATC GCGACGGCGG CCGACGGGGA AGCCTTGACC AAGCAGATCT TCGGCGACCG GGTGGTGTGG GTGCCGTGGC GGCGGCCCGG CTTCCAGCTG GGTCTCGACA TCGCGGAGAT CAAACGGGCC AACCCGCAGG CCATCGGCAC CATCCTCGGC GGCCACGGCA TCACCGCGTG GGGTGACACG TCGGCCGAGG CCGAGGCGCA TTCGCTGGAG ATCATCGAAA CCGCGGAGCG CTACATCGCC GAACACGGCC GCCGCTATCC GTTCGGCGCG CCTCTGGCGG GCTACGGGGC CCTCCCCGAG GGTCAGCGCC GGGACAAGGC CGCCGCACTC GCACCGTTCC TGCGTGGGCT GGTCTCCACC GACAAACCCC AGGTCGGCCA TTTCACCGAC GATCCGCGCG TGCTCGAATT CCTCAGCTGC GGTGAGCATC CGCGACTGGC CGCCCTCGGC ACCAGCTGCC CCGACCACTT CCTGCGCACC AAGGTCAAAC CGCTGGTGCT CGACCTGCCC GCCGACACCT CGGTCGAGGA CTGCAAGGCG CGACTGGCCG AACTGCACGA GGCGTACCGC GCCGACTACC GCGCCTACTA CGAGCGGCAC GCCGGACCCG ACAGCCCCGC GATGCGCGGC GCCGACCCGG CCATCGTGCT GATCCCCGGT GTCGGGATGT TCAGCTACGG CAAGGACAAG CAGACCGCGC GGGTCACGGG CGAGTTCTAC CTCAACGCGA TCAACGTCAT GCGGGGTGCC GAGGCGATCT CCACGTACGC GCCGATCGAC GAGGCGGAGA AGTTCCGCAT CGAGTACTGG GCGCTGGAGG AAGCCAAACT GCAGCGTATG CCGAAGCCCA AACCGCTGGC CACCCGCATC GCGTTGGTGA CGGGCGCAGC CTCGGGTATC GGCAAGGCCA TCGCCACCCG GCTGGCCGCC GAGGGCGCCT GCGTGGTGAT CGCGGATCTG GACGCCGGAA AGGCCGCGGC CGCAGCGGAA GAGCTCGGGA ACACCGACAT GGCGGTGGGG ATCGCCGCCG ACGTCACCGA CGAAGCGGCG GTGCAGGCCG CCGTCGACGC CACCGTCCTG GCGTTCGGCG GCATCGACAT CGTCGTCAAC AACGCCGGTC TCTCCCTGTC GAAGTCGCTG CTCGAGACCA CCGCCGCGGA CTGGGACCTC CAGCACGATG TGATGTCGCG CGGGTCCTTC CTGGTGTCCA AGGCCGCGGC CAGGGCGCTG ATCGACCAGG GGCTCGGCGG CGACATCATC TACATCTCGT CGAAGAACTC GGTGTTCGCC GGGCCGAACA ACATCGCGTA CTCGGCGACC AAGGCTGATC AGGCCCACCA GGTGCGGCTG CTCGCGGCCG AACTCGGTGA GCACGGCGTC AAGGTCAACG GCATCAACCC CGACGGCGTG GTGCGCGGTT CGGGCATCTT CGCCGGCGGC TGGGGCGCCA AACGGGCCGC GGTCTACGGG GTTCCAGAGG AGGAGCTCGG CGCCTACTAC GCGCAACGCA CCCTGCTCAA GCGTGAGGTG CTGCCCGAGA ACGTCGCCAA CGCCGCGTTC GCGCTGTGCA CGTCGGACTT CTCGCACACC ACCGGGTTGC ATGTGCCGGT CGACGCGGGC GTCGCCGCGG CTTTCTTGCG ATGA
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Protein sequence | MTDTVRELID RSNRLGADPK NTNYAGGNTS AKGTETDPVT GAPVELLWVK GSGGDLGTLT EKGLAVLRLD RMRALVDVYP GVEREDEMVA AFDYCLHGRG GAAPSIDTAM HGLVDAAHVD HLHPDSGIAI ATAADGEALT KQIFGDRVVW VPWRRPGFQL GLDIAEIKRA NPQAIGTILG GHGITAWGDT SAEAEAHSLE IIETAERYIA EHGRRYPFGA PLAGYGALPE GQRRDKAAAL APFLRGLVST DKPQVGHFTD DPRVLEFLSC GEHPRLAALG TSCPDHFLRT KVKPLVLDLP ADTSVEDCKA RLAELHEAYR ADYRAYYERH AGPDSPAMRG ADPAIVLIPG VGMFSYGKDK QTARVTGEFY LNAINVMRGA EAISTYAPID EAEKFRIEYW ALEEAKLQRM PKPKPLATRI ALVTGAASGI GKAIATRLAA EGACVVIADL DAGKAAAAAE ELGNTDMAVG IAADVTDEAA VQAAVDATVL AFGGIDIVVN NAGLSLSKSL LETTAADWDL QHDVMSRGSF LVSKAAARAL IDQGLGGDII YISSKNSVFA GPNNIAYSAT KADQAHQVRL LAAELGEHGV KVNGINPDGV VRGSGIFAGG WGAKRAAVYG VPEEELGAYY AQRTLLKREV LPENVANAAF ALCTSDFSHT TGLHVPVDAG VAAAFLR
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