Gene Mmcs_3900 details

Gene Information

• Locus tag: Mmcs_3900
• ID: 4112730
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Mycobacterium sp. MCS
• Kingdom: Bacteria
• Replicon accession: NC_008146
• Strand: +
• Start bp: 4154639
• End bp: 4156567
• Gene Length: 1929 bp
• Protein Length: 642 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 638033043
• Product: serine phosphatase
• Protein accession: YP_641061
• Protein GI: 108800864
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG2208] Serine phosphatase RsbU, regulator of sigma subunit
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGTGTTCG TCGTCGGGTG TCTGTTCGCC GTCCTCGTCG TCGGGTGGCT ATCGCTGGTG 
ACCCAGCCGA CGGCGCTGGC CAGCACGGCG TGGTGGCCCG TCGCCGGGAT CGCGGTCGGG 
TTGGGCATCC GCTTCCCGCG CCGTCAGGTG TGGGCGCCGG CCGCCGCCGT CGCCGCGATC 
ACCCTTCCGC TCCTGCTCTG GGCGGGACGG CCCGCTGCGC TCGCGACCGC GCTCGCATTC 
GCCGTCGCCC TCGAGATGGT GATCGCCACC CTCATCCTCA GGGGGCGCCA CGATCGCCTG 
CCGAGCCTGT CGGAACCGCG CGACCTCGGC CGGTTACTGG TGGCCGTCGC CTCGGCGGCG 
ATCGTCTACG ACGTGGTCGG CGCCGGCGCC ACCTACCTGC TCGCCGATTC CACCGAGGCG 
TGGATCCGGT TCGTCACGTC CGCGCCGAAG CACGCGGCCG GGATGCTGCT GCTGGTCCCG 
CTGTTCATGC ACCTGCCGCG CCGCCCCCGG CCTGCGGGTC CGGTCGAGAC CGTCGCGCAG 
GTCGTGACGA CCCTGGGCCT GGTCACCTTC GTGTTCGCGT TCAACCCCGG AATGCCGCTG 
TCCTTCCTCC CCTTCATGCC ACTGGTGTGG GTGGCGATCC GACTGACGAC CCGGGAACTG 
ATCCTGCTGA TGCTGGCGAT CGCCGTCATC GCCTCGGCCG GCAGCGCGTA CGGCACCGGG 
CCGTTCGCGT TCAACCTCCT CGCACCGGAG GTGGGCAACC TCGTCCTGCA GGTCTTCGAG 
CTGTCGATGG TGGTCGTCTT CCTCTCGCTC TCGCTCGCGG TCGGCCACGA GCGGACCACC 
GCACGGCGCC TCAACGAGAG CGAGGAGTTG TTCCGCCGGA TCTTCGAAAC GTCGGTGGCC 
GGGATGCTGA TCGCCACCCG TGCCGCCACG GGATGGAAGG TGTTGCGCGC CAACGACTCC 
GCGGTGGCCA TCATCCCCGG TCTCGCCGAC GCGTCGGCCG AGCTCACCGA TCTGTTGGGC 
GAGGAGGCCA CCGCCGCGCT CTCGGCGGAA GCCGACGCGC TCACCGAGGG CAACGCGCGC 
CTGACGCTGA CCACCGGCAC CGAGCGGATC CTCAACGTCA GCATCTCCCC GATCAGCGTC 
GACGGGGACA GCAGGACCCT CGCGCTGCAG TTCTACGACA TCACCGAGGC GATGCGCGCC 
CGCAGGCTGG AACAGGAGGA ACTCGAGCGC GCCGCCGAAG TGCAACGTGC CCTCCTGCCC 
GGGACGCTCC CACCCACCCC CGGGTGGACT TCCGGTGCGG CTTCGGTGCC GGCCAGACAG 
GTCGGCGGGG ACTTCTACGA CATCCGGGTC CAGGTCCCGC ACGTGGTCCT CAGCCTCGGC 
GACGTCATGG GTAAGGGCAT GGGCGCGGGA ATGTTGGCCG CCGCGACCAG AGCCGCGCTG 
CGCGCCACCG ACCCCGAGCT CAGTCCATCG GCCGCCGTGA GCCACATGGC CGGGGTCGTC 
GATCACGACC TGCAACGCAC CAGCGCCTTC ATCACGCTGA CCTACGTCCT CGTCGACCTC 
GTCACCGGCG ACTTCCGCGT CGCCGACGCC GGGCACGGAC TGCACTTCGT CGTCCGGACC 
GGATCGGGTC TGGTGGAGCG CACCGCCTCC AGCGATATGC CGGTGGGGCT CGACAGCGGC 
TGGGGCGAGA AGCGCGGAGC GCTCCAGCCC GGCGACGCGA TCCTCCTCGT CAGCGACGGC 
GTGATGGACC TGTGGGGCGG CTCCGTCGAA GAGCTGTCGG ATGCCGTGGC ACAGTGCGCC 
CGGCAGCACG GCACGAGCCC GCAGGCGTTG GTCGACGCCC TGTGCGCGCG GGCGAACGGT 
GATCTGGACC GCGATGATGT GACGGCCGTC GTCCTGCGGC GGGAACCGGT GGACGTGGCG 
GCACGCTGA 

 

Protein sequence

MVFVVGCLFA VLVVGWLSLV TQPTALASTA WWPVAGIAVG LGIRFPRRQV WAPAAAVAAI 
TLPLLLWAGR PAALATALAF AVALEMVIAT LILRGRHDRL PSLSEPRDLG RLLVAVASAA 
IVYDVVGAGA TYLLADSTEA WIRFVTSAPK HAAGMLLLVP LFMHLPRRPR PAGPVETVAQ 
VVTTLGLVTF VFAFNPGMPL SFLPFMPLVW VAIRLTTREL ILLMLAIAVI ASAGSAYGTG 
PFAFNLLAPE VGNLVLQVFE LSMVVVFLSL SLAVGHERTT ARRLNESEEL FRRIFETSVA 
GMLIATRAAT GWKVLRANDS AVAIIPGLAD ASAELTDLLG EEATAALSAE ADALTEGNAR 
LTLTTGTERI LNVSISPISV DGDSRTLALQ FYDITEAMRA RRLEQEELER AAEVQRALLP 
GTLPPTPGWT SGAASVPARQ VGGDFYDIRV QVPHVVLSLG DVMGKGMGAG MLAAATRAAL 
RATDPELSPS AAVSHMAGVV DHDLQRTSAF ITLTYVLVDL VTGDFRVADA GHGLHFVVRT 
GSGLVERTAS SDMPVGLDSG WGEKRGALQP GDAILLVSDG VMDLWGGSVE ELSDAVAQCA 
RQHGTSPQAL VDALCARANG DLDRDDVTAV VLRREPVDVA AR