| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmcs_3148 |
|---|
| Symbol | |
|---|
| ID | 4111980 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium sp. MCS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008146 |
|---|
| Strand | - |
|---|
| Start bp | 3337722 |
|---|
| End bp | 3338408 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638032278 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_640311 |
|---|
| Protein GI | 108800114 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0274068 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGCGG TGCTGTGGGA CATGGATGGA ACGCTCGTCG ACTCCGAAAA GCTCTGGGAC
GTCTCGCTTG CCGCGCTCTA CGACCGGCTC GGCGGGGTGA TCACCGACGA GTTGCGCACC
GCCCTGGTCG GCAGTTCCGC GGAGAACACC ATCAAGACGA TCTTCGCCGA CCTCGGCCTC
GAACCCGACC CCGCGGCGAT GGCCGAGGCC GACAGATGGC TGCACGATCA CACCGGCGAC
CTGTTCGCCA CCCACGGTCT GCCGTGGTGC GACGGCGCCC GCGAACTGCT GGAAGCCCTT
GCGGGCGAAG GTGTTCCGAT GGCATTGGTC ACCAACACCC AGCGCGCGCT GACCGAGCAG
GCGCTCGACA GCATCGGCCG CCACTTCTTC TCGGTGACCG TCTGTGGTGA CGAGGTGCCC
AACGGCAAAC CCGAACCGGA CCCCTACCGC CGCGCCGCCG CACTGCTCGA CCTCGACCCC
GGTCACTGCT TGGCGGTGGA GGATTCGGTC ACCGGCACTC TCGCCGCCGA ACTCGCCGGG
TGCCCGGTCC TCGTGGTCCC CAACGACGTC GTCGTCCCAC CGAGCCCGCG CCGCAGGCAC
GTCGACTCGC TGCGCGACGT GGCCGTCGAC GACCTGCGCG CATTCCACGC CGAGATCGCC
GCCGCCTCCG GTAAACGCAG CGCCTGA
|
|---|
| Protein sequence | MRAVLWDMDG TLVDSEKLWD VSLAALYDRL GGVITDELRT ALVGSSAENT IKTIFADLGL
EPDPAAMAEA DRWLHDHTGD LFATHGLPWC DGARELLEAL AGEGVPMALV TNTQRALTEQ
ALDSIGRHFF SVTVCGDEVP NGKPEPDPYR RAAALLDLDP GHCLAVEDSV TGTLAAELAG
CPVLVVPNDV VVPPSPRRRH VDSLRDVAVD DLRAFHAEIA AASGKRSA
|
|---|
| |