Gene Mmcs_1356 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmcs_1356 
Symbol 
ID4110193 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMycobacterium sp. MCS 
KingdomBacteria 
Replicon accessionNC_008146 
Strand
Start bp1469751 
End bp1471499 
Gene Length1749 bp 
Protein Length582 aa 
Translation table11 
GC content67% 
IMG OID638030477 
Productcholine/carnitine/betaine transport 
Protein accessionYP_638524 
Protein GI108798327 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1292] Choline-glycine betaine transporter 
TIGRFAM ID[TIGR00842] choline/carnitine/betaine transport 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.379286 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGGTCA GTTCAGAGAA GGACAACGAG AAACACCGCC GACGCCGCGT CGAGGCAATC 
AGGTCGCCGA CCGACGAGGC GATCCCGCAT CCCATCCTCG ACATCCCGGT CGACGAGGAG
GCCTACACCG GCTACCGGGG TCTCGACTGG GTGGTCTTCG GCGTCACCGC CGTCATCGCG
GTGGCATTCC TGGCCTGGGG GTTCGTCAGC ACCGAGTCGC TGGCCACGGC GTCGGGGAAC
GCCCTGACCT GGGTGATGGA CAACACCGGG TGGCTGTTCG TGCTCACCGC GTCGGGATTC
GTGGTCTTCG TGCTGTGGCT GGCGCTCGGC CGCTACGGCA ACATCCCGCT CGGCCGTGAC
GACGAGGAAC CCGAGTTCCG CAGCGTCTCG TGGGTCGCGA TGATGTTCAG CGCAGGCATG
GGCATCGGGC TGATGTTCTT CGGTGTGGCC GAGCCGCTGA CCCACTTCGC CACCCCGCCG
CCGGGCGTCG TGCCACAGGG CGGTGCCGAG GCCGGTGCCG AGGCCGTCGA GTCCGCGATG
GCCACCACGC TGTTCCACTG GACCCTCCAT CCGTGGGCGA TCTACGCCGT CGTCGGGCTG
GCCATCGCCT ACGGCGTCTA CCGCAAGGGC CGGCTGCAAC TGATCAGCGC GGCGTTCGAA
CCCCTGATCG GATCCCGGGC CAACGGGCCG TGGGGCAAGG TGATCGACAT GCTGGCGATC
TTCGCCACGC TGTTCGGGTC GGCGGCCTCA CTGGGCTTGG GCGCGTTGCA GATCCGCAGC
GGCCTGCAGA TCGTCGGCGG CATCGGCGAG ACCGGCAACA CGATCCTCAT CGTCATCATC
ACCGCCCTGA CGGTCGCGTT CGTGCTGTCG GCCGTCTCGG GGGTGGCGCG GGGCATTCAG
TGGCTGTCGA ACATCAACAT GGTGCTCGCC CTGCTGCTGG CGTTGTTCAT CTTCGTCGTC
GGCCCGACGG TGTTCATCCT CAATCTGTTG CCGACCTCGA TGGGCAGCTA CCTCGCCGAC
CTGGCGATGA TGTCGGCCCG CACCGGCGCC GAGGGTCCCG ACGTCGACAC CTGGCTGCAG
TCGTGGACGA TCTTCTACTG GGCCTGGTGG ATCTCGTGGA CCCCGTTCGT CGGCATGTTC
ATCGCCCGCA TCTCGCGCGG ACGCACCATC CGGCAGTTCG TCACCGGTGT GCTGCTGGTG
CCGAGCCTGG TGTCGCTGGT GTGGTTCTGC ATCCTCGGCG GCGCGGCCAT CGACACCCAG
CAGGGCGGGG TGGATCTGGC CGGTGAGGGC AGCAACGAGG AGCAGTTGTT CACCCTGCTC
GCCCAGTACC CGATCGCGAC CGTGGCCAGC ATCGTGGTGA TGGTGCTGGT GGCGATCTTC
TTCGTCTCCG GCGCCGACGC CGCGTCGATC GTCATGGGCT CGCTGTCCGA GCGCGGCACG
ATCAAACCCA CCCGGGGTGT GGTGATCTTC TGGGGCGTCA CGACGGGCGC GGTGGCGGCG
GTGATGCTGC TGGTCGGCGG CGCGGACGCG CTGACCGGTC TGCAGACCAT CACGATCATC
GCCGCGCTGC CCTTCGTCCT CGTCATGGTG GGGCTGGCGG TGGCGCTGGT CAAAGACCTG
CGCAACGATC CGCTGGTGGT GCGGAAGAAG TACGCCGCGG AGGCGGTGGA CAGTGCGGTC
ATCCACGGCG TCATCGAACA CGGCGACGAC TTCATCATCT CGGTGGAGAA GGATCCCGAC
GCCAGGTAG
 
Protein sequence
MTVSSEKDNE KHRRRRVEAI RSPTDEAIPH PILDIPVDEE AYTGYRGLDW VVFGVTAVIA 
VAFLAWGFVS TESLATASGN ALTWVMDNTG WLFVLTASGF VVFVLWLALG RYGNIPLGRD
DEEPEFRSVS WVAMMFSAGM GIGLMFFGVA EPLTHFATPP PGVVPQGGAE AGAEAVESAM
ATTLFHWTLH PWAIYAVVGL AIAYGVYRKG RLQLISAAFE PLIGSRANGP WGKVIDMLAI
FATLFGSAAS LGLGALQIRS GLQIVGGIGE TGNTILIVII TALTVAFVLS AVSGVARGIQ
WLSNINMVLA LLLALFIFVV GPTVFILNLL PTSMGSYLAD LAMMSARTGA EGPDVDTWLQ
SWTIFYWAWW ISWTPFVGMF IARISRGRTI RQFVTGVLLV PSLVSLVWFC ILGGAAIDTQ
QGGVDLAGEG SNEEQLFTLL AQYPIATVAS IVVMVLVAIF FVSGADAASI VMGSLSERGT
IKPTRGVVIF WGVTTGAVAA VMLLVGGADA LTGLQTITII AALPFVLVMV GLAVALVKDL
RNDPLVVRKK YAAEAVDSAV IHGVIEHGDD FIISVEKDPD AR