Gene Mmcs_0024 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmcs_0024 
Symbol 
ID4108912 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMycobacterium sp. MCS 
KingdomBacteria 
Replicon accessionNC_008146 
Strand
Start bp29896 
End bp33222 
Gene Length3327 bp 
Protein Length1108 aa 
Translation table11 
GC content60% 
IMG OID638029150 
ProductHsdR family type I site-specific deoxyribonuclease 
Protein accessionYP_637202 
Protein GI108797005 
COG category[V] Defense mechanisms 
COG ID[COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 
TIGRFAM ID[TIGR00348] type I site-specific deoxyribonuclease, HsdR family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.955051 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGGCAA GGGGTCCGGA GTACGACTAC GTCGAGAAGC CCAGCATGGA GTTGTTGGCT 
GAGCTCGGCT GGAACCCGGT CGATGCTTTC CACGAAATCC TCGGCGCCGA GGGCACCCTT
GGACGTGACT CCCAGCACGA CGTGATTCTG ACCCATCGCC TGCGCCTAGC GATGCGGAAC
CTAAACGCCG AAGACGTGCC GGACCTCTCC ATCAACGAGG CGATCGAGGC GTTGACCAAG
GACCGTTCGG TGATGGATCG GGTCCGCGCC AACCGTGAGG TTTACGACCT GCTGCGCGAC
GGATACCAGG CCGAGTGGGA AGATGACAAC GGCGACAAGC GAATCGAATT GATCCGCTAC
ATCGATCTGC GAGACAAACT GAACAATGAC CTGCTAGCGG TCCAGCAGAT GTGGGTTAAG
GGCCCGTTGC ACAGCCGTCG CCTCGACGTC GCCCTGTTCG TTAACGGCGT ACCGCTGGCA
GTGCTGGAGT TCAAGGAGCC GAATGCGCCG GTCAAGTCGG CCTACGACGA CAACGTCACC
GACTATCGCG ACACCATCCC GCAGCTCTTC ATACCGAACT GTCTTGTCCT GCTGTCCAAT
GGAAGTGAGG CGAAAGTTGG GTCGACGTAT GCGCCGTGGG ACTTCTTCTC GGACTGGAAG
GTCATTGACG CCTTCGGAGC GCGTAGTGAG ATCGCGTTGC AGACAGCTCT ACGGGGCACC
TGCGATCCTG CGAACCTGCT CGACCTTTTC GAGAGCTTCG TAGCTTACAT GGAACGTCCC
GGCGGATTGG TCAAGATCGT CGCGCGTTCG CATCAGTATC TCGGCGTCAA CGCTGCGATC
GAGAATCTTA ATCGGGCGCG CGCTGTGCAC GACAAACGCC TCGGCGTCTT TTGGCATACC
CAGGGTTCGG GCAAAAGCCT GTCGATGTTG TGGTTCACCC AGAAGGTGCT CCGGCACGTC
CGGGGCAAGT GGACTTTCGT AATGGTTACT GACAGAACCG AACTCGACAC GCAACTCCAC
GGAGAGTTCG CTGATGCCGG CGCGATCCCG CCCGAAGCGC GGGTCCACGC AGACTCCATT
GCGCATCTGC GTGAACTGTT GGAGGCCGAC CACCGGTACG TCTTCACGCT TATCCAGAAA
TTTCAGCCAG CTAAGGGTGA ACGCCAGATG CCGGTCTTGT CGGAGCGGTC AGACATCATC
GTCATCACCG ATGAGGCACA CCGCAGCCAG TACGACACCC TCGCGCTCAA CATGCGAACC
GCGCTGCCCA ACGCCTCGAT GATGGGCTTT ACCGGGACCC CACTGATTGC CGGCGAAGAG
CAGGCGACCC GTCAGCAGTT TGGTGACTAC GTCAGCATCT ACAACTTCGG CGACGCCATC
GAAGACGGCG CCACGGTCCC CCTCTACTAC GAAAATCGCA TTCCCGAGCT ACAACTCACG
AACGCCGAGT TCGCCGATGA ACTTGACGCG CTCCTGGAAA AAGCCGAGCT CGATGAAGAC
GCGGAGGGCG CGCTGGCACG CAAATTCGGG ACCCAGTACA CCCTGCTGAC CCGTCCCGAA
CGTTTGCAGA CCCTCGCACA AGACCTCGTT TCACACTTCG TTGGCCGCGG ATTCTCAGGC
AAGGCAATGT ACGTCGGCCT CGACAAAGCC GCAGCCGTGA CAATGCACGA CCTCGTCCAG
GACGCGTGGG CCGAGCACCT CGCCGATCTG CGACGCCAGC ACGACGCGCT GCCCGAGCTG
GAGCGTCCGT GGCTGGCATC GCGGATTGAG CTGATGGAAA CCACCGACAT GGCAGTCGTG
GTCTCCCAAA GCCAGAACGA ACTGAAGATG CTCGATGACT TAGGCCTCGA CATCCGACCC
CACCGAGAGC GGATGAACCG CGAAGACCTC GCAGAGAAGT TCAAAGACCC AAACGACCCG
TTACGGCTCG TATTCGTGTG CGCGATGTGG ATGACCGGCT TCGACGCCCC GAGCGTGTCG
ACTATCTACC TCGACAGGCC GATGAAAAAC CACACCCTCA TGCAGACCAT CGCCCGCGCC
AACCGCGTAT TCCCGGACAA GGACAACGGT CTCATTGTCG ATTACGTCGG AGTCTTCCGG
AACTTGGAGA AGGCTCTCGC CATCTACGGT GCAGCCAAGG AAGGGGAGTC GCCTATCGAG
ATCATCGATG CTCTCGCGGA TGAACTCGAC ACTGCCGTCG CAGATCTGAT CGCCTTCTGC
GCGGGCGTCG GCGTCGACTT GATCGCAGTG CGCAATGCTC AAGGCTTCGA CCACGTCGCT
AAACGGGACG CTGCCATCGA GGCGTTGTTG GTTGACGAAC AGACCCGCAA CGACTTCACG
ACTAAGGCTC GACAGGTCCG CCGCCTATAC AAGGCACTGC TCCCAAACCC GAAAGCGGCT
GCACAGCAAC GTAACGTCGC TGCGATCCGA GTGTTGGCCG AGCGCATCCA CGAAGTCACC
AAGCCGCCAA CACCTGACAT TGGAGTTGTC GCCGACGCCG TAGACGCCCT GCTGGATCGA
TCGGTGGGGG CCGAGGAGTA CGTCATCCGC GCTGCTGCCG AGGGTAGCGA GCCGGACCCA
CTGATCGACC TATCGCAGAT CGATTTCGAC GGACTCGCAG CGAGACTGGC CGGCCGCAAG
CGCGCAGAGA CGGACAGGAT GGCTCAGCTT CTTCGGCAGC AAGCCATCGG CGCGGCGATG
CGGAACCCGA CGCGCTACGA GCTGGTCGAG CGTATCGAGC AGCTGATTGC TGACTACAAC
GCGGGCAGCG TCAATATCGA TGAGTACCTG CGTCGTCTCG TCGAGCTTTC AAGAACACTC
ACTTCCGAAG AGGAACGAGC AGTCCGCGAA GGCATGACCG AGGAAGAACT TGCGATCTTC
GACCTCCTAA CGCAACCCGA TCCCGTGCTC ACCGCGGAGG AACGAGAAAG AGTTCAGGCG
AGCGCGAAGA CACTGCTCCA ACATCTGCAT GAAAAGCTCG TCCAGGATTG GCGACGCAAG
GTCGACGTGA TGAACGACGT CAACAGCACC ATCCGCCGCG TACTCGACGA CGGTTTACCC
GAGACGCCAT ACACAGTCGA TGTCTTCCGC GAGAAGGTTC AGCTCGTATA CGACCATGTT
CTGAGTGCGT ACGGAGATGA CGGTGAGAGT GTGTACACCC GACGCGTGGA CGTCGGCTTT
CCGCCTCAGA CAGCGGGGCA AGTGCCTTTG GGTCCGATTG ATGTAGACAG GATCGCCGAT
GACGTCGTGG CGCGCATCCA CGCCGATCCC GCCTTCGCTG AGCACGTTGC GCGACAGCTG
ATAGACCGGC CAAACGCAGC AGAATGA
 
Protein sequence
MMARGPEYDY VEKPSMELLA ELGWNPVDAF HEILGAEGTL GRDSQHDVIL THRLRLAMRN 
LNAEDVPDLS INEAIEALTK DRSVMDRVRA NREVYDLLRD GYQAEWEDDN GDKRIELIRY
IDLRDKLNND LLAVQQMWVK GPLHSRRLDV ALFVNGVPLA VLEFKEPNAP VKSAYDDNVT
DYRDTIPQLF IPNCLVLLSN GSEAKVGSTY APWDFFSDWK VIDAFGARSE IALQTALRGT
CDPANLLDLF ESFVAYMERP GGLVKIVARS HQYLGVNAAI ENLNRARAVH DKRLGVFWHT
QGSGKSLSML WFTQKVLRHV RGKWTFVMVT DRTELDTQLH GEFADAGAIP PEARVHADSI
AHLRELLEAD HRYVFTLIQK FQPAKGERQM PVLSERSDII VITDEAHRSQ YDTLALNMRT
ALPNASMMGF TGTPLIAGEE QATRQQFGDY VSIYNFGDAI EDGATVPLYY ENRIPELQLT
NAEFADELDA LLEKAELDED AEGALARKFG TQYTLLTRPE RLQTLAQDLV SHFVGRGFSG
KAMYVGLDKA AAVTMHDLVQ DAWAEHLADL RRQHDALPEL ERPWLASRIE LMETTDMAVV
VSQSQNELKM LDDLGLDIRP HRERMNREDL AEKFKDPNDP LRLVFVCAMW MTGFDAPSVS
TIYLDRPMKN HTLMQTIARA NRVFPDKDNG LIVDYVGVFR NLEKALAIYG AAKEGESPIE
IIDALADELD TAVADLIAFC AGVGVDLIAV RNAQGFDHVA KRDAAIEALL VDEQTRNDFT
TKARQVRRLY KALLPNPKAA AQQRNVAAIR VLAERIHEVT KPPTPDIGVV ADAVDALLDR
SVGAEEYVIR AAAEGSEPDP LIDLSQIDFD GLAARLAGRK RAETDRMAQL LRQQAIGAAM
RNPTRYELVE RIEQLIADYN AGSVNIDEYL RRLVELSRTL TSEEERAVRE GMTEEELAIF
DLLTQPDPVL TAEERERVQA SAKTLLQHLH EKLVQDWRRK VDVMNDVNST IRRVLDDGLP
ETPYTVDVFR EKVQLVYDHV LSAYGDDGES VYTRRVDVGF PPQTAGQVPL GPIDVDRIAD
DVVARIHADP AFAEHVARQL IDRPNAAE