| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_3552 |
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| Symbol | |
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| ID | 4482507 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 4459043 |
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| End bp | 4460575 |
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| Gene Length | 1533 bp |
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| Protein Length | 510 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 639724301 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_867443 |
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| Protein GI | 117926826 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00157607 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCTCCA GCCCCGCGAC CCAACGGCTC AAACTGCTCC AGGATGCCCA AGAGCATCTG
TTACGTGGCC GCTTGCCTAC CGCGTGGAAT ATCCTGGATC GAGCACTAAG GAGCACACCG
GGTGATGCCG CCATCCTATC TCTTATGGCG CAGATTCAAC GGCAACGCGG AGATTTGCCA
CTGAGTGAAA AACTGGCGCG CATGGCCATC GCCGCCCACC CTGAGGATGG TCAAGGTCAC
CTCGCCTTGG GCCATACTCT TGCTAAACAG GGGCGCAGCA GCGAAGCGGA AAAATGTTGG
CAACAGGCCG CCATCCTTGA TCCCACCAAT CCAGAACCCC ATCTGAGTAT GGCGCAACTG
GCCGAGCAAG AAAAACGCTA TATCGAGGCC GAAAGCGCCG CCGACCGCGC CTTAAGCCTG
AAACCCGATC ATCTTCAGGC CACCATGATC CGTGCCCGCT GTGATGCCAT GCGCAACCAG
CCAGACCAAG GGGCCAAGCG GCTGTTAAAA CTCTCCACAG CCAGTATGTT GCCGGCTCAA
CGGGTGGACT ATTATTTTGA GCTGGGGCAC TTGCAACAGG ATGCCCGACG TTATCAACAA
GCCTTTGAAA GTTATAGCGA AGCAAACCGT CTGCAACACT TGACCGCCCA ACCGAGCGAG
AGCCCCCGTG CCGAGCAACT TATCCCCCAA CTGGCGCAGT GGAGCGCAGC CTTACCGCCA
CCCAACCCCA CGCCCATCGC AGCCCCAGGC AAACAGCCGG TTTTTATCAT GGGCTATCCC
CGCAGCGGCT TTACCCTGCT CAGCCAGATG TTGGCCGCCC ACCCCCGATT GGTGGTTATG
AGTGGCTATC GCCTGCCCAG CAGCCTGGTT GAGCGGCTGG CCCCCCATAG CTACCCCAGC
GGTTTGGCCC AGTTGGACCC GCCTACGCTG GCGGCCATGC GTCAACTCTA CTTCAAGCAT
GTTCAGCGCA TTATCGGGGC GCTACCAGCC CCCGCTACTT TGGTGGATAT GCACCCCTTG
CATATTTTGG ATCTGCCCAT GATCCAGCGA CTTTTCCCCC ATGCCGCCAT TATTCACCTC
ACCCGTCACC CCATGGATGC AGCGCTACAA TGCTTTATCC GTCACACCCA CGCCCATGAT
CCCGCAACCG TGATGGTGCG CTCCCTGCAC GAGGCTGTCG CGCTTTATGT CGCCATGATG
AATCTCTTAA ACGCCTCGCT GCGCCTACAG CCTGCTACCC TGCACACCCT GCGCTATGAG
TCCATCGTCG AAAACATGCC CATGGCGGTG CAGACCCTCT TAACCCGACT GAATATTCCC
TGGGATGACG CCATCCACCG CTACCGGGGC GTGCCCATGC GGCGCTTGTT TAATGCCCAG
GGCAGCCTGC CCGAAGCCCC CCCGCTACAT AGCCGTCAAG TGGCATTATG GCCGGTTTTT
CATAGTTATC TGCGCCCTTT CATACCCCTG CTCGACCCCT ATGCCCACTA TTTGGGTTTT
ACCAAACCCA GCACGGTGGC ACCCCGCCGA TAA
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| Protein sequence | MISSPATQRL KLLQDAQEHL LRGRLPTAWN ILDRALRSTP GDAAILSLMA QIQRQRGDLP
LSEKLARMAI AAHPEDGQGH LALGHTLAKQ GRSSEAEKCW QQAAILDPTN PEPHLSMAQL
AEQEKRYIEA ESAADRALSL KPDHLQATMI RARCDAMRNQ PDQGAKRLLK LSTASMLPAQ
RVDYYFELGH LQQDARRYQQ AFESYSEANR LQHLTAQPSE SPRAEQLIPQ LAQWSAALPP
PNPTPIAAPG KQPVFIMGYP RSGFTLLSQM LAAHPRLVVM SGYRLPSSLV ERLAPHSYPS
GLAQLDPPTL AAMRQLYFKH VQRIIGALPA PATLVDMHPL HILDLPMIQR LFPHAAIIHL
TRHPMDAALQ CFIRHTHAHD PATVMVRSLH EAVALYVAMM NLLNASLRLQ PATLHTLRYE
SIVENMPMAV QTLLTRLNIP WDDAIHRYRG VPMRRLFNAQ GSLPEAPPLH SRQVALWPVF
HSYLRPFIPL LDPYAHYLGF TKPSTVAPRR
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