Gene Mmc1_3378 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmc1_3378 
Symbol 
ID4483314 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMagnetococcus sp. MC-1 
KingdomBacteria 
Replicon accessionNC_008576 
Strand
Start bp4208102 
End bp4209340 
Gene Length1239 bp 
Protein Length412 aa 
Translation table11 
GC content59% 
IMG OID639724126 
Productmajor facilitator transporter 
Protein accessionYP_867270 
Protein GI117926653 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00880] Multidrug resistance protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0191855 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.504281 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACGTA AAAGCACCAT CAGCATTATC TTCTTTACCG TGTTTCTCGA CCTGCTCGGT 
TTCGGATTGG TCCTACCCCT ACTACCCAAC TACGCCAGCG ATCCCATGTT CCACGCCTCC
ACCATGGAAA TCGGCGTGCT CATGGGGATC TACTCCCTCA TGCAATTTCT CTTTGCACCC
CTCTGGGGCC GCCTCTCCGA CCACATCGGA CGCCGCCCCG TGTTAATCAT CGGCCTCTTC
GGCTCCGCCC TCTCCTACCT GATCTATGGT CTGGCCGAAA GCTTAATGGT GCTCATCCTA
TCCCGCGCCC TGGCCGGCTT TATGGGGGCC AATATCGCCG CCGCCCAAGC CGCTATGGCC
GACCTAACAC CCCCAGAAAA ACGCGCCCAA GCCATGGGCA TCATCGGGGC CGCCTTTAGC
CTAGGCTTCG TGCTCGGCCC CGCCATGGGC GGCTACCTCG CCAGTACCTA CGGGATCAGC
GCCGCACCCC TGGCCGCAGC CCTCATCACC GGCCTCAACG CCGTGGCCGC TCTCTTCCTG
CTCTCAGAAA CTCGTGACCT GAGCACCGAA CAACAACAAC CCCTAAGCAA ACGCGCCCAC
CCCCTCTCCC TACACCCCTG GAAACAAGCG CGCAATTACC CAGGTGCCTT GATGGTCTGC
CTGTTTATGG GCCTGTTTAT CACCCTGTTC GCCGCCTTTG AAATGGCCCT GCCCCTCTGG
ACCCAAATCA TCATGGGCTG GGATAGCGGA TCCCAAACCA TGGCCGAAAA TGGACACCTG
TTTGCCTTCG TCGGAGTGGT TATGGCCATC GTGCAAGGTG GCATCGTGCG GCGATTGGTG
CCCAAAATTG GCGAAGTGCG TACCGCCTAC AGCGGCCTAA TCTGTATCGC CCTCGGTTTG
ATGCTACTAG GACAAGCCAG CAACTATACC ACCCTGCTCA TCGCCCTCGG CCTCGCCGCA
ACAGGCGCCG GTTTGGTCCA CCCCGCCTTC TCTTCACTGG TCAGCCTCAA TACCGATAAA
GATAAACAAG GACTCATGAT GGGACTGTTC CAATCCATGG GCGCTCTGGG CCGCGTGCTA
GGCCCCCTAT GGGCTGGCAT CGCCTTCGTC TCCCTCAAAG GTAACCTGTT TTTCGTCAGC
GCTATGGGTA TGACTGTGCT GCTGGGCGCC CTCATCCCCC TCAGCCGAGA TCGCATTAAG
GACGCCCGCC AAATAGCCGC GCAAGACGCA AAATCATAA
 
Protein sequence
MKRKSTISII FFTVFLDLLG FGLVLPLLPN YASDPMFHAS TMEIGVLMGI YSLMQFLFAP 
LWGRLSDHIG RRPVLIIGLF GSALSYLIYG LAESLMVLIL SRALAGFMGA NIAAAQAAMA
DLTPPEKRAQ AMGIIGAAFS LGFVLGPAMG GYLASTYGIS AAPLAAALIT GLNAVAALFL
LSETRDLSTE QQQPLSKRAH PLSLHPWKQA RNYPGALMVC LFMGLFITLF AAFEMALPLW
TQIIMGWDSG SQTMAENGHL FAFVGVVMAI VQGGIVRRLV PKIGEVRTAY SGLICIALGL
MLLGQASNYT TLLIALGLAA TGAGLVHPAF SSLVSLNTDK DKQGLMMGLF QSMGALGRVL
GPLWAGIAFV SLKGNLFFVS AMGMTVLLGA LIPLSRDRIK DARQIAAQDA KS