Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_3161 |
Symbol | |
ID | 4483265 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | - |
Start bp | 3934780 |
End bp | 3937905 |
Gene Length | 3126 bp |
Protein Length | 1041 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639723910 |
Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
Protein accession | YP_867057 |
Protein GI | 117926440 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.362215 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.00000213823 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGATGTCGA GTTTCTTTAT TGACCGTCCG GTTTTTGCCT GGGTGATCGC CATTGTCATT ATGCTGGCTG GGGTCTTGTC CATTTTACGT CTGCCGGTGG AGCAGTACCC TAACATTGCG CCACCCTCAG TCTCCATTAA CGCCAGCTAT CCTGGTGCTT CGGCTGAGAC CCTGGAAAAT AGCGTCACCC AAATTATTGA GCAGAGCCTG ACGGGCATTG ACCATATGCG CTATTTCTCC TCCAGCAGCG ATGCTTCGGG GATGGCGAGT ATTACCATCA CCTTTGAGCC CGAGGCGGAC CCGGACACCG CACAGGTGCA AGTGCAGAAT AAACTTCAGG CGGCCATGCC GCTACTTCCC CCCGAAGTGC AGCAGCAGGG GGTGAGTGTC ACCAAGGCCA ACAACAGCTT TTTGATGGTG GCCGGTTTTT ATTCGGAGGA TGGTTCCATC TCCCAGATGG AGCTGGGGGA TATGCTCAAC TCCAAGGTGA AAGATGCCAT TGCCCGAGTT AATGGGGTGG GTAGTGTGAC CATCTTTGGC GAGCCCCATG CCATGCGAAT CTGGCTGGAT CCACGCAAAC TGTTTAGCTA CAACCTCACG GTCATGGATG TGCAACAGGC CATTCGTGCC CAAAACAGCG ATATTTCCGC CGGTCAATTG GGCGGCCTGC CTGCGCGCAA GGGACAACAG CTCAACGCCA CCATCACCGC CCAATCGCGG TTGCAAAGCG TGGAGGATTT TCAACGCATT TTACTGCGTG TCAATACCGA CGGCTCCCAG GTGCGGTTGC AGGATGTGGC TCGGGTGGAG CTGGGGGCCC AAAGCTATGG TCGGGTGGTG CGCTACAAAC GTTTGCCCGC AGCGGGTGTG GCGGTAAGCT TGGCCTCTGG GGCCAACGCC TTGGATACCG CAGCAGCGGT CAAGGCGCGG ATTGCAGAAC TGTCACAGAC CCTGCCGGCC AAGGTTAAAA TTATTTATCC CTATGACACG ACCCCCTTTG TTAAGCTCTC GATCAAAGAG GTGATCAAAA CGCTGGTGGA GGCCGTGTTT TTGGTGTTTG TGGTGATGTT TTTGTTTTTA CAGAACTTTC GCGCTACCCT TATCCCCACC ATCGCGGTGC CGGTGGTGCT GTTAGGCACC TTTGGGGTGC TGTCAGCCTT TGGTTTTTCC ATCAACGTGT TGACCATGTT TGCCATGGTC TTGGCCATTG GTTTGTTGGT GGATGACGCC ATTGTGGTGG TGGAAAACGT CGAACGCATT ATGGAGCATG AAGGGCTCTC GCCCCGTGAG GCTACCCGTA AATCCATGCA GCAGATCACC GGCGCATTGG TGGGGATTGC CTTGGTGTTG TCGGCGGTGT TTGTGCCCAT GGCATTCTTC AGCGGCTCAG CGGGGGCGAT CTATCGCCAG TTTTCTATCA CCATTGTCTC GGCTATGACC CTCTCGGTGG TGGTGGCGTT GGTGCTTTCG CCCTCGTTGT GTGCAACCTT TCTTAAACCC GCCGTAAAGG GGGAGCATAG TCACGGATTT TTTGGCTGGT TTAACCGTAC GTTTAATGCT GGACGGGAGC GGTTTGTGAC CAGCGCGGGC TATATTGCCG CCCGAGTGGG TCGCTTTACG CTGATCTATG GGCTGCTGGT GGGGGGCATG CTCTATCTGT TTATGGGTCT GCCCAGCTCC TTTTTGCCCA ACGAAGATCA AGGCACCATG TACCTCATGG CCAGTGCCCC TGCGGGCTCC ACCGTGGAAC GTACCATGGA GAGTGTGGAG CAGATTGAGG ACTATTTTCT CGAACATGAA ACCGAGAATG TGCGACATCT ATTTACTGTA ACCGGGTTTA GCTTTGCGGG ACGGGCGCAA AATGTGGCGC TGGGTTTTGT GGGGCTGCGG GATTGGAGCG AGCGCAGCCG TAAGGATCAA TCGGTATTTG CCCTGTCGGG ACGGGCCATG GGGGCCTTTG CGGGCATTAA AGATGCCCGT GCCTTTGCCT TTTATCCCCC TCCTATCCGT GAGCTGGGTA ATGCGGCAGG CTTTGACGTG CAGCTGGTGG ATCGGGCCGG TTTGGGGCAT GCAAAATTGA TGCAGGCCCG CAACCAGCTT TTGGGGATGG CGGCTAAAAA TCCCAAACTC CAGGGGGTGC GTCCCAATGG CTTGAACGAT GTTCCCCAAT TCACGGTGGA TATTGATCAT GAAAAAGCCA GCGCCCTAGG GCTCTCCATC GCCGATATTA ACCAGACCTT GCAAACCGCT TGGGGATCGG CCTATGTCAA TGATTTTCTG GATAAAGGTC GTATAAAACG GGTTTATATT CAAGGGGATA CTCCCTACCG CATGATGCCC GCAGACCTGG ACCAATGGTA TGTGCGCAAT ACCCAGGGCA AGATGGTTCC ATTCGCGGCT TTTTCCACGT CTCGGTGGAG CTATGGCGCA CCCAAGCTGG AGCGCTTTAA TGGGAGTGGC TCGGTCAATA TTCAGGGCTC CGCTGCCCCC GGCGTGAGTA CCGGTACCGC CATGCAGGAG ATCGAACAGA TGCTCCAGAA GCTGCCCGCT GGGATTGGCT TGGAGTGGGT TGGACTCTCC TACGAAGAGC AGCGCTCGGG TGCGCAAGCG CCGATCCTGT ACGCGGTATC CATCTTGTTT ATCTTTTTGT GTCTGGCGGC GTTGTATGAG AGCTGGTCGG TGCCCTTTTC CGTCATCCTT AGTGTCCCGC TGGGGATTTT GGGTGCGGTG TTGGCGGCCA AAAGCTATGG TTTGAACAAT GATGTCTACT TTCAGGTAGG TCTGCTTACC ACCATGGGTT TGGCTTCCAA AAATGCCATT TTGATTGTGG AGTTTGCTAA AAAACAGTAT CAGGCTGGCA TGGACCTCCG GACTGCTACC CTGATGGGGG CCAAACAGCG TTTTCGCCCC ATTATCATGA CATCCATGGC CTTCGTTTTG GGGGTATCCC CGTTGGCCGT GGCCAATGGA GCCGGTTCGG CCAGCCAAAA CGCCATCGGT ATTAGCGTGG TGGGGGGGAT GCTGGCGGCG ACCTTTATTG CGATCTTTTT TGTGCCGATG TTCTATATGG GCATACAACG CCTCGCGCGC GCCCCAGAAC AGCTCAAGCA GGAGGTTGCT CCGTGA
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Protein sequence | MMSSFFIDRP VFAWVIAIVI MLAGVLSILR LPVEQYPNIA PPSVSINASY PGASAETLEN SVTQIIEQSL TGIDHMRYFS SSSDASGMAS ITITFEPEAD PDTAQVQVQN KLQAAMPLLP PEVQQQGVSV TKANNSFLMV AGFYSEDGSI SQMELGDMLN SKVKDAIARV NGVGSVTIFG EPHAMRIWLD PRKLFSYNLT VMDVQQAIRA QNSDISAGQL GGLPARKGQQ LNATITAQSR LQSVEDFQRI LLRVNTDGSQ VRLQDVARVE LGAQSYGRVV RYKRLPAAGV AVSLASGANA LDTAAAVKAR IAELSQTLPA KVKIIYPYDT TPFVKLSIKE VIKTLVEAVF LVFVVMFLFL QNFRATLIPT IAVPVVLLGT FGVLSAFGFS INVLTMFAMV LAIGLLVDDA IVVVENVERI MEHEGLSPRE ATRKSMQQIT GALVGIALVL SAVFVPMAFF SGSAGAIYRQ FSITIVSAMT LSVVVALVLS PSLCATFLKP AVKGEHSHGF FGWFNRTFNA GRERFVTSAG YIAARVGRFT LIYGLLVGGM LYLFMGLPSS FLPNEDQGTM YLMASAPAGS TVERTMESVE QIEDYFLEHE TENVRHLFTV TGFSFAGRAQ NVALGFVGLR DWSERSRKDQ SVFALSGRAM GAFAGIKDAR AFAFYPPPIR ELGNAAGFDV QLVDRAGLGH AKLMQARNQL LGMAAKNPKL QGVRPNGLND VPQFTVDIDH EKASALGLSI ADINQTLQTA WGSAYVNDFL DKGRIKRVYI QGDTPYRMMP ADLDQWYVRN TQGKMVPFAA FSTSRWSYGA PKLERFNGSG SVNIQGSAAP GVSTGTAMQE IEQMLQKLPA GIGLEWVGLS YEEQRSGAQA PILYAVSILF IFLCLAALYE SWSVPFSVIL SVPLGILGAV LAAKSYGLNN DVYFQVGLLT TMGLASKNAI LIVEFAKKQY QAGMDLRTAT LMGAKQRFRP IIMTSMAFVL GVSPLAVANG AGSASQNAIG ISVVGGMLAA TFIAIFFVPM FYMGIQRLAR APEQLKQEVA P
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