| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_3064 |
|---|
| Symbol | |
|---|
| ID | 4483524 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 3830855 |
|---|
| End bp | 3831328 |
|---|
| Gene Length | 474 bp |
|---|
| Protein Length | 157 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639723812 |
|---|
| Product | BadM/Rrf2 family transcriptional regulator |
|---|
| Protein accession | YP_866961 |
|---|
| Protein GI | 117926344 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1959] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR00738] rrf2 family protein (putative transcriptional regulator)
[TIGR02010] iron-sulfur cluster assembly transcription factor IscR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0000552074 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.000000647935 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTTAA CCACGCGAGG ACGCTATGCC GTGACAGCGA TGCTGGATCT GGCCCAGCAT
GCCAACCGGG GTCCCGTGAC GTTGGCAGAG ATCTCCAACC GTCAGCAAAT ATCGCTCTCC
TATCTGGAGC AGCTGTTTGC CAAATTGCGT CGTGGTGGAT TGGTGGGTAG TGTGCGCGGC
CCCGGTGGGG GTTATCAGTT GGATAGAGGG GCCGAACAGA TCTCAGTGGC GGCCATTATC
CGCGCGGTGG ATGAACCGAT TCATGCCACC TCTTGCAAGG ATAAGGGCAC GGAGGGGTGC
CGCCGTGATA CCCGCTGCAT TACCCACGAT CTGTGGGCAC GGCTGGGGGA GCATATTTAC
CACTATCTGG AGTCGGTTTC ATTGGCCCAG TTGATGCGGG ACGGTTCAGC CTTGGCCATG
CTGGGCGAGG CCGAGGTGGA CCATACCGAG ATGGTGCTGC GGGGTCCCCA TTGA
|
|---|
| Protein sequence | MRLTTRGRYA VTAMLDLAQH ANRGPVTLAE ISNRQQISLS YLEQLFAKLR RGGLVGSVRG
PGGGYQLDRG AEQISVAAII RAVDEPIHAT SCKDKGTEGC RRDTRCITHD LWARLGEHIY
HYLESVSLAQ LMRDGSALAM LGEAEVDHTE MVLRGPH
|
|---|
| |