| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2951 |
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| Symbol | |
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| ID | 4482025 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | - |
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| Start bp | 3656466 |
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| End bp | 3659822 |
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| Gene Length | 3357 bp |
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| Protein Length | 1118 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639723698 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_866848 |
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| Protein GI | 117926231 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0784] FOG: CheY-like receiver |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.38957 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCATC GTAACAGTCT ACTTACGCTG TATATGGTTA TGGTGGTGGC GGTGGTGGCC
GTGGCTGCGG GGCTATTGTT ACTGCTGTAC CAGGATAGCT TTGCAAAAAA ACAGGCGCAT
TTGCAAGATT TGGCCACCAA TCAAGCACGT TTGATTGATG AGGTAGCCAA TTTCAATCAT
TCATATCGTC ATGATTATCC AACCGGTGCG GTAGAGGCGA CCATAAGTCA GATCCGCGAT
GCCCATGGCA AGAGCATTGG ATTTGGTCAA ACGGGGGAGT TTATTATTGC CTACCGTAAG
TCTGGTCATA GTCACGTTCA TTTTATTGTG GCACACCGTT TTACGCAGGC GGTCACCCCA
TCCTTTCGGG AAAACCCCAA CCATCTTCAC CCTGCTATGG CCCGTGCCAT GGCCGGGGAG
AGCGGCTTTA TGGAGGGTAC CGACTATCGG GGTAAGCAGG TTTTGATCGC TTACGCACCG
GTGGTCAAGC TGCGTATGGG GGTGGTGGCT AAAATGGATG TGCAAGAGGT CCTTGCCCCC
TTTGAGCGAA TCTTAAAAAT AGGCTTATCA ATAACGTTAT TGCTCATAGG CGGGGGGAGC
GTTGCCTATC TGTGGGTTGC CAAGGGTGTG GCCGGGCGCA TGGAGTGGCA GCATCAAAGG
TTGGCTATGT TGGTTGAGGG TATGCCTGCT GTCATCTATA CCGAGGATCT CCGCACACAA
CTTCCTTACT ATGTGTCACC CCAAGCGGTG GTATTGTTGG GGGGGCAGGG GTGCCAAGCT
GACGAACCCC TGGATGTTTG GTGGAACCGT CATGTGTGGG CTGAGGATTG GGAAACGCTA
CAGCACGCGC GACAGATGCT CAAAAAGCAC AAACGTCCGA TGCAGGTCGA GTACCGTATG
GTGCGTCAAG ACGGTCAGCT TATTTGGGTG CGCGATGTGG CCCGTTTGGT GTGTGATGAG
CAGGGGCTGC CACTGTTGGT GCAGGGTATG GTGATGGATG TGAGCGAGGC GCGGCATACC
CATGAAAAGC TCATTGCCAG TGAGGTTAGA TTTCGTCAAC TCTATGAAAA TGCACCGATA
GCCTATCAAT CGCTCAATAC GGAAGGGGTG ATTCAAAATG TCAACCAGGC ATGGTTGAAG
AAAACCGGTT ATGAGCTTTC GCAAGTATTG GATCACTCCC TGTTTGAGTT TCTGGTGGTG
GGCCAAGAGC AGGAGGTTGC CAAAAAATTT GAGGCCTTTT TACAAGCAGG TTATGTTCAA
GATTTGCACT ATGAGCTGCG CTGTGCCGAT GGTCGAGCCC TTAAAGTTTC CATCAATGGG
CAGGTGAGTC GGGACCGCTC GGGTCGGTTG GTTAAGACGC ACTGTGTTTT AACCGACATT
ACGGAGCAAG ACCGTGCGGC GCAGGCGTTG CAGGAGAGCG AAAGCCGGTT ACGGCTGATT
TTAGCGTCAA CGGGGGAGGG TCTGTTTGGT CTGGATTTGC AGGGGAACTT TATCTTTGCT
AACCCAGCTT GCTTGCGCAT GATGGGCTAT AGGGATGATC GTCAGCTATT GGGTAAGCCG
ATGCTGGAAA TTGTCAGTTG TTGTTCCTCC CAATTTGTAC GGCGGGGGAA GGGGAGCTGC
CCGATTAGTC AAATTTTAAA AACGGGCCTG CCCAACCACG CTGAAGGAGA GCTGTTTCGG
CGGGCGGATG GTAGCTTTTT TAGTACCGAA TTTTGGTCGC ATCCCATTCA GCAAAACGGG
GAGCTGGTGG GTGCGGTGGT AACCTTTATC GACATCAGCC AGCGGGTACT CAACCAGACG
GCGTTAAAGG CGTCTGAGCT TAAATACCGC ACCATTTTTG AGTCGGTACC GACCCCGCTG
CTTATTTTGG ATACCAGCGG CGTGGTGAGG GATGTCAACT CCGCGCATCA AAGCACGTTT
GGCCGTTTTG CCGGGGGCTC GTTGATGGGG GTTTCTATCC GAGAGCATCC GGGGGTGGCG
GGTTCGCTGT TGGCAGAGAG CTTTTTGGCG CTGGCTAAGG GTGAGCCGAT GCCCTTGCAA
CAGGCCAGCT ATACCATGGA AGCAGAGGGT GAGGCGATTC ACTTTAATGT GAGAGGCGTG
CCCTTTGTAA CACGCGATGG TGAGGGGCGT GAGGATCTGC AAGGGGCGTT GGTGATTCAT
GAAAACATCA CAGACCTCAA ACAGACCGAG CTGAAGTTGC GCAAGGCGGT GGAGGAGGCC
GATTGCGCCA CCCATGCTAA GGGGGATTTT TTGGCGGTCA TGAGTCATGA GATCCGCACC
CCTATGAACT TGGTGGTGGG CATGGCCGAG CTGTTGTTAG AAACCGATGT CAATGCCGAG
CAAAAACACT ATCTGGAAAA GTTACAGAAG GCGGGGGATA CGCTGCTTAG TTTGATCAAT
AATATTCTTG ATTTAACCAA ATTAGACGAG GGCCAGCTCA AGTTGCTGGA CGAGCCTTTT
GCGCCACAGG CGTTGTTGGA TGAGGTGTCT GGCATCATCT CCCTAGCGGC TGAGGCTAAG
GGACTGACCC TGAGTTGCGA GATTCAGGAG GGGGTGCCTG AGCGGGTCTT GGGGGATTCG
GTGCGCATCA AGCAGGTATT GCTTAATCTG CTCTCCAACG CCTTAAAATT TACCCAGCAA
GGGTTTATTC GTTTGTCGCT GACGGTTGAG GGCGCGGAGG GGGCGCAGCA GCTCTGTTAT
GCGGTCAGTG ATAGTGGCAT GGGCATACCC GATTACCACT TGGACGAGGT GTTTGAGCGG
TTTTCCCAGG GGGATAGCAG CATGACCCGC CGGTTTGGGG GCAGCGGTCT GGGCTTGGCG
ATCTGTAAAA AGTTGGTTAT TTTGATGCAA GGGCAGATCC AGGTTAGCAG TCAGGTGGAC
GTTGGGGCCA TCTTTCAGAT TCGTTTACCG TTACGTGCGG CGGCGTTGGC CCCTGCGTCG
TCCCAGCAGC AGGTGAAGCG CCGTTTGAAC CAAGGGGTTA GGGTACTGCT TGCTGAAGAT
GCCGTTGATA ATCGCATGCT CATACAGGCC TATTTGCGCA ATTCCCCCCA TGATTTAGTG
ATGGTGGAGG ATGGTCAACA GGCTCTACAG CTTATAGAAG AGGGGACTGA TTTTAACCTG
ATTCTCATGG ATGTGCAGAT GCCGGTGATG GATGGCTATA GTGCCACCCG CGCCATTTTG
GCAGAGTTGG GGGCCCAACA GCGGCCCCCT TGCCCCATTG TGGCTTTAAC GGCCCATGCG
TTGGAGGGGG ACCAAGCGCG TAGTTTGCAG GCGGGTTGTG TGGCGCATTT GACCAAGCCA
ATCAAAAAGA AAATTTTGTT AGAGGCCATC CAAACCTATG CGCGGCTAGC CCCATAG
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| Protein sequence | MDHRNSLLTL YMVMVVAVVA VAAGLLLLLY QDSFAKKQAH LQDLATNQAR LIDEVANFNH
SYRHDYPTGA VEATISQIRD AHGKSIGFGQ TGEFIIAYRK SGHSHVHFIV AHRFTQAVTP
SFRENPNHLH PAMARAMAGE SGFMEGTDYR GKQVLIAYAP VVKLRMGVVA KMDVQEVLAP
FERILKIGLS ITLLLIGGGS VAYLWVAKGV AGRMEWQHQR LAMLVEGMPA VIYTEDLRTQ
LPYYVSPQAV VLLGGQGCQA DEPLDVWWNR HVWAEDWETL QHARQMLKKH KRPMQVEYRM
VRQDGQLIWV RDVARLVCDE QGLPLLVQGM VMDVSEARHT HEKLIASEVR FRQLYENAPI
AYQSLNTEGV IQNVNQAWLK KTGYELSQVL DHSLFEFLVV GQEQEVAKKF EAFLQAGYVQ
DLHYELRCAD GRALKVSING QVSRDRSGRL VKTHCVLTDI TEQDRAAQAL QESESRLRLI
LASTGEGLFG LDLQGNFIFA NPACLRMMGY RDDRQLLGKP MLEIVSCCSS QFVRRGKGSC
PISQILKTGL PNHAEGELFR RADGSFFSTE FWSHPIQQNG ELVGAVVTFI DISQRVLNQT
ALKASELKYR TIFESVPTPL LILDTSGVVR DVNSAHQSTF GRFAGGSLMG VSIREHPGVA
GSLLAESFLA LAKGEPMPLQ QASYTMEAEG EAIHFNVRGV PFVTRDGEGR EDLQGALVIH
ENITDLKQTE LKLRKAVEEA DCATHAKGDF LAVMSHEIRT PMNLVVGMAE LLLETDVNAE
QKHYLEKLQK AGDTLLSLIN NILDLTKLDE GQLKLLDEPF APQALLDEVS GIISLAAEAK
GLTLSCEIQE GVPERVLGDS VRIKQVLLNL LSNALKFTQQ GFIRLSLTVE GAEGAQQLCY
AVSDSGMGIP DYHLDEVFER FSQGDSSMTR RFGGSGLGLA ICKKLVILMQ GQIQVSSQVD
VGAIFQIRLP LRAAALAPAS SQQQVKRRLN QGVRVLLAED AVDNRMLIQA YLRNSPHDLV
MVEDGQQALQ LIEEGTDFNL ILMDVQMPVM DGYSATRAIL AELGAQQRPP CPIVALTAHA
LEGDQARSLQ AGCVAHLTKP IKKKILLEAI QTYARLAP
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