| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2805 |
|---|
| Symbol | |
|---|
| ID | 4481421 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 3516987 |
|---|
| End bp | 3520538 |
|---|
| Gene Length | 3552 bp |
|---|
| Protein Length | 1183 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639723550 |
|---|
| Product | TP901 family phage tail tape measure protein |
|---|
| Protein accession | YP_866704 |
|---|
| Protein GI | 117926087 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5283] Phage-related tail protein |
|---|
| TIGRFAM ID | [TIGR01760] phage tail tape measure protein, TP901 family, core region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCGTA CCCAGGAGGC TCTTGAATTC ATCATCAGAG CTAATGATGA TGAACTGCGT
TCTGCGGTCT CACGTATGCA GAGCGACTTT CGTCAGGGTG TGCAGTCCAT GGCCTCGGCT
GCCCAGACCC AGGCGCAGCG TATCAATGGG GCACTGTCGG ACATCGATGG TTTTCGCAAT
CTGAAACGGC AGATCCGGGA GAGTGAAGAT CAATGGCAGG CCGCCACCCG TGAGGTGGCC
CGGCTTGCGG TGCAGATGCG GGAGACCGAA ACACCCACCC GTGCCATGAC CCGCGCCTTT
GAGCAGGCCA AGCGTAATGC CCGTGCTCTT AAGGATCAAC TGGATGCCCA GCGGGAATCC
CTGCATGGTC TGCGGGGTGA TCTGCGTCAG GCTGGGGTGG ATACCAGCCG CCTCAGTGAA
AGCCAGGAGC AACTCCAGCG GGATCTGCGC GCCTCTACCC GTGAGGTGCA GGCCCAAAGC
CGCGTGAACC GCGCCTTTGC TGCTATTGGC GTGCGCTCCA TGCGGGAGGT GGAGTCTGAG
GTCCAGCGGC TGGAGAATGC CTATCGGGAG CTCTCCCGTT CAGGGCGGGT GTCTGCGGCA
GATCTGAACC GCGCCCACCA ACAGATGCAG AGCCGTGTCC GCACCCTGCG CGGTGAGATG
CAGGGGTTGA AAGGTGCCAT GACCGGAATG GTGGGTACCG TGCGCAATCT GGCAGCAGCG
TATGCCGGGT TTGAATCTAT CCGAGCGGCC TCCGGCTTTA TCAAAGATTC CATCCTCACT
TATGCCGCCT TTGACGACAC CATGAGGCAG GTGGCGGCGA CGTCGGGGGC AACGGCAGAA
GAGCTCACCC TATTGACCGA GCTGGCCAAG GATATGGGAT CTTCCACTCG CTTTTCTGCC
AGTCAAGCGG CCGGTGGTCT CAAGGCCATG TCTCTGGCTG GTTTGACGGC ATCTCAGCAA
CTGCAAGCCC TACCAAAAGT TTTGGAGCTG GCGGCAGCCG GTTCGGTGGA TCTGGAAACC
GCAGCGGGGA TCGCCACCGC CTCCATGGCT CAGTTTGGGC TACAGGCCCG TGATCTGGGC
AATGTAAACG ACATCTTGGT CACCGCCTTT ACCAACTCGG CAACCGATAT TCAGGATCTG
GGGCTGGCCC TGCAATACGC CGGTCCCGTG GCCCGTGCGG CTGGAAACAG CTTTGAAGAG
ACCGCCACCG TGCTGGCCCT GCTGGCCAAG AACGGCTTCT CTGGGGAAAA AGCAGGGACC
GCGTTGCGAG CCGCTTATGC CCGTCTATTG GCCCCTGTGG ATAAAGCCCA AGAGGCGATC
AACCGTTTGG GCTTGCAGAC CCGTGATGCC ACTGGTCTGC TTCTACCCAT GACCCAGGTA
CTGCGTAACC TCCGTGCAAG TGGTGCCGAT GCGGCTGACA TGATCCAGAT CTTTGGGGTG
GAAGCGGCTC CTGCGCTTAC TGCTGCGGTG GGTATGTCTT CCCAGGCGTT CGTGGAGCTG
GTCGCCAAGT TCAGCGAGGT CGGTGGTGTG GCTGCCCGGG TGGCCACCGA GATGGAAGCG
GGCATGGGCG GCTCGATCCG TTCCCTGGAG TCTGCCTGGG AGGGGGTGAA GATTGCCGTT
GGTGAGGCCA TCGACAAGCA CAGCAGCCTC AATTTTCAAG AGCTCACCTC CGCTATCAAT
GAAAACAAGG ATGCCATCGT CGAACTGGCC CTGGCCGGAG TGGATCTGGC CGTCATGCTG
GGGCGTGTGG CCCTGATGGT TGGCGAGTTC ATCCTGGAGT GGAAAGAGGT CATTGGTGTG
CTGGGTGGGG CGTATCTGGC CATCAAAACA CTGCGTGTGG CCATGGCAGC ACTCACAGCA
CTACAGACCG CTCAGTGGTT TCTAACTACC ACCCGTGCCG CGTCTGGCTT GGTAGCCGTG
GTAGGCGCTC AGGGATTGGT TGGCGCATTG GCGCTGGTCC GCACCCGTCT GCTTTCTCTT
ATCTCAATCA ATCTGGCCGG GTTCTTTATC CGGGGTGCTG CCGCTGTTGG AAGCCTGCTC
GCCGTGCTCA CAGGCCCTGT TGGGCTTATA GCTGGGGCGA CGGCGGCTGT GGGCGCACTA
GGCTACATGG CTTACTCCTG GTTGAAAACC AAGGATGCCC AGGATGAAGC CGTAGCATCG
GGACAGGCAG CCGTTGAAAC TCAGCAGCAG TTGGCGGCAC GCCTTAAGCA GATCGGTCAG
CAGCTGGGGG TCAACATCCC CGATATGGAG ACCTTCAACC GTTTGCAACG GGAAGGCATC
ATCATCGCCG ATAAAAGCAC CGGGGGGTGG CGCTTGGCGG CACAGGCTGC CTCGGAGGCA
ATCCAGACCC AACGTCGCGC AGCCCAAGAA GCGGCCAACC AGCTATCCAA CCTGACCCGC
CAGCGGACAT CTGCCCAGCG TAAACTGGCT GCTCTGGAGC AGCAACTGGT CGAAGAGCAG
AAGCGCCAGG CCCGTGAGGT ACTCATCGAG AAGATCCGTA CTGCTGAACA GTCCGTTCAG
GCCACGGAAC GCGCCCTGCA ACAGAGCCTG ACTGCTGAGA AACGACTGGC CGATCAGATC
CAGGGCATCG AAGAGAAAAA GCGCAACGCC CGTATCTCCA CCGAGGACAA AGTGCGCTCG
CTGCTGGAAC GCAACATGTC CGACCGGGAG AAAGAGACCT CCCGCGCCGC CGCAGCTTCC
CAAAAGTTGG CTGAGGCCCA ACAGCTGCTC TCCAAAACAA CCCTCTCCGA GCAGGACATC
AAGTGGGCCG AATCCCTGGC CCGAGGGGCT CAGGATGCCT TCTCCAGTTT GAATGATACC
TCCACCGCCA TCCGGGGTGT GCAGGATGCG GGGGATGTAC TGGATCAACT CTATCAGCGC
CAGGAGGAGA GTGCCCGAAA GGCGCTTTCT ACCCAGAAAG ATCAGACCAC ATCTCTTACC
AAGCAGTTGG AAACAGCACG TGGTCAGGTG GATCTGCTCA AACAGGCTAT GGAAGCCCTT
CCTGACCGGG CCACCAAATC AGTTGAGTTG CAAGCCCAGG TTGAGCAAGC CCAATCAGCA
CTCTCAGCCA TCGAAAAACA GATGGCGGCG TTAAAAGACA AGACCATCAC CGTAACCGTG
CAAACGGTAG AGGCCAGACA GGCAGGAGGT ATGATCGGCC TGCAACGGGG TGGACGACTC
CCCGGCTATG GGGGTGGTGA CCGCATCCAT GCCCTATTGG AAGCCGGTGA AATCGTCATT
CGCAAAGAGC GCTCACGCAT TTTCAAGGAT CTGCTGTTGA CCATCAACTC CGCCCCCATG
GATACCGTGC GGCGCATCCT GCCCAACCTT CCCAGGTTTC AAACCGGGGG GATGGTGGGA
TTGCCGAAGA TTCCAGCACT TCCGCAACTC TCTTTTGCTG GAGCCGGTGG AAATCAGCAG
CCCCCAGTAG AGGGGATCGT TCAGCTTGAT CTGACCATGA ACGGCAGACC AGCCGCCTCC
ATCACCAGCC CCCGGCAACA GGTGCGGCAA CTGGTAGATG CCCTCAAGGA ACTGCAGCGC
GGTACCTTCT GA
|
|---|
| Protein sequence | MARTQEALEF IIRANDDELR SAVSRMQSDF RQGVQSMASA AQTQAQRING ALSDIDGFRN
LKRQIRESED QWQAATREVA RLAVQMRETE TPTRAMTRAF EQAKRNARAL KDQLDAQRES
LHGLRGDLRQ AGVDTSRLSE SQEQLQRDLR ASTREVQAQS RVNRAFAAIG VRSMREVESE
VQRLENAYRE LSRSGRVSAA DLNRAHQQMQ SRVRTLRGEM QGLKGAMTGM VGTVRNLAAA
YAGFESIRAA SGFIKDSILT YAAFDDTMRQ VAATSGATAE ELTLLTELAK DMGSSTRFSA
SQAAGGLKAM SLAGLTASQQ LQALPKVLEL AAAGSVDLET AAGIATASMA QFGLQARDLG
NVNDILVTAF TNSATDIQDL GLALQYAGPV ARAAGNSFEE TATVLALLAK NGFSGEKAGT
ALRAAYARLL APVDKAQEAI NRLGLQTRDA TGLLLPMTQV LRNLRASGAD AADMIQIFGV
EAAPALTAAV GMSSQAFVEL VAKFSEVGGV AARVATEMEA GMGGSIRSLE SAWEGVKIAV
GEAIDKHSSL NFQELTSAIN ENKDAIVELA LAGVDLAVML GRVALMVGEF ILEWKEVIGV
LGGAYLAIKT LRVAMAALTA LQTAQWFLTT TRAASGLVAV VGAQGLVGAL ALVRTRLLSL
ISINLAGFFI RGAAAVGSLL AVLTGPVGLI AGATAAVGAL GYMAYSWLKT KDAQDEAVAS
GQAAVETQQQ LAARLKQIGQ QLGVNIPDME TFNRLQREGI IIADKSTGGW RLAAQAASEA
IQTQRRAAQE AANQLSNLTR QRTSAQRKLA ALEQQLVEEQ KRQAREVLIE KIRTAEQSVQ
ATERALQQSL TAEKRLADQI QGIEEKKRNA RISTEDKVRS LLERNMSDRE KETSRAAAAS
QKLAEAQQLL SKTTLSEQDI KWAESLARGA QDAFSSLNDT STAIRGVQDA GDVLDQLYQR
QEESARKALS TQKDQTTSLT KQLETARGQV DLLKQAMEAL PDRATKSVEL QAQVEQAQSA
LSAIEKQMAA LKDKTITVTV QTVEARQAGG MIGLQRGGRL PGYGGGDRIH ALLEAGEIVI
RKERSRIFKD LLLTINSAPM DTVRRILPNL PRFQTGGMVG LPKIPALPQL SFAGAGGNQQ
PPVEGIVQLD LTMNGRPAAS ITSPRQQVRQ LVDALKELQR GTF
|
|---|
| |