| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1897 |
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| Symbol | |
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| ID | 4483596 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | - |
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| Start bp | 2359085 |
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| End bp | 2360881 |
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| Gene Length | 1797 bp |
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| Protein Length | 598 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639722642 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_865811 |
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| Protein GI | 117925194 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00502769 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.608581 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCTTA TGCCAAAACT GCCCGAAGAT GTTCAAGCCT TGTCTGCTCA GCAGAGCGCC
CTAACCCATG CAGTTGAGGC CATGCAAAAT GGGGATGTGG GAACCGCATT ACGTGTCTTG
CAAGAGCTCT GCACACGCTG GCCAGAGAGC CTGCAAGGCT GGAAATATCT GGCCATTGCC
TTGGATGGTG CCGGGCAGAA TGAAATAGCC GAAACCGTCT ATGAAAAAGT GTTAAGCCAG
ACCCCCTGGG ACCATATGTT GTTGCACAGT TATAGCGGCA TGTTGGGGGT TATGGGGCGT
TACGAACAGG CCATTGAGGT CATTCGTAAA GCAATCGCAG TCACGCCACA ACTCGAATAC
CGTCAGCACT TGGTTGCGAT GCTCTTTAAC GGGGATTTTT TGGATCAGGC TCAAATGGAG
CTTAATAGCT TGTTGCAAGG AGCGTGTGAT CTAGATGTTT GTCTTTATTA TCAAGCGCGT
ATTCAACATC AACAGGGCTT GTATGAACAG GCGCTCCAAA GCTATCAAGC GCTCACCACT
ATTGCGCCAC GACATGTTTT GGGGATCATC CATAAAGGCA TTGCCCTAAA GGATCTGGGC
GACCTAGAGA GCGCGGTGGC GTGTTACCAG TGGGCGCTAC AGATAAATCC CCAGCAACCA
GAAGGGTGGG TTAATCTCGC GGTGACGCTG GAGCGTCTTA ATCGTTTGGA AGAGGCGCAG
CAGGCCTTGG AAACCGCATG GAATCTGGTG CCTAATAACC CTTTGTTACG TTTGGTCAAA
ATCCGCCTAT ACCGGCATGC TCAACGGTTT GATGATGCCT TGGCGGAGCT TGAGGCGTTT
AAACGCGAAT CCCTGGCGTT GATCCATAAA AAAGAGTTGG CCTTTGAAGA AGGGGCAATT
TTTGCTGCCT TGCAGGAAAC ATCTGCCGCT ATGCGCGCCT TTGCCCGTGG TCATCAATTG
GCATATGCCG CGTTAAGTGC AGAGCAGCAA GAAGAGAGCT TTCAATTTTT AATGCAGTTG
AAAGATAGAG CGGCCTTAAT CGAACAGGCG CAAGTTGCCA CAGATGGCCC CTCTACCGAG
GCTTCCCCTA TTTTTTTCCT GGGTTTCCCC TGTTCTGGGA GTAGTCTGCT CAGCAGCTTA
TTGGATAACC ACCTGAGTTT ATCCTCCATG CTAGAAAAAT CCAGCCTTGC CGTCGTGTGG
GAAAAATTGG TTCAAGAGCA TGGTCTAAAC GAGCGGCATA TGGGGCAACT CACTCCCGCT
TTGCGTGCCC TTGGTCGGGA ATACTACTGG CAAGCATGCG GTGTCACCCC GAATGCCCCT
GCACAGTGGC TAGATAGCAT GCCCCTGAAT GTGCTCTATC TGCCCCTTTT GGTCCAACTG
TTCCCCAACG CCAAGAGTGT GTTGCTGGTA CGCCATCCCT ATGGGGTGTG TCTAAGCGCA
TATATGCAGG ATTTTCAGCA TAATCCAACA GTTGCACAGT TCCATGAGTT AGGCACCGCA
GCGACCCTGT ATAGTGAGAC GATGGATTTT TGGTGCCAAG CACAACACCG CTTTGCGTTG
CAGCCCTATA CGGTACGGTA TGAGGATTTG CTCAGTGATG CCACCCCCGT ACTGCAACCG
CTGTTGGCCT ATCTAGGCCA ACCCTGTGAT GATGTGGCGA CGTTGGGGGA AGCCCTATCC
CTCTCTATGC AGCACCCTGC CACCCATCAT TGTGACTGGC AGGCTTATGG ACCCTATCTA
CACGCCGTGC AAGCCCCCTT GCAACGCTGG TTATCCTACT GGGGGTATGA CGCCTAA
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| Protein sequence | MTLMPKLPED VQALSAQQSA LTHAVEAMQN GDVGTALRVL QELCTRWPES LQGWKYLAIA
LDGAGQNEIA ETVYEKVLSQ TPWDHMLLHS YSGMLGVMGR YEQAIEVIRK AIAVTPQLEY
RQHLVAMLFN GDFLDQAQME LNSLLQGACD LDVCLYYQAR IQHQQGLYEQ ALQSYQALTT
IAPRHVLGII HKGIALKDLG DLESAVACYQ WALQINPQQP EGWVNLAVTL ERLNRLEEAQ
QALETAWNLV PNNPLLRLVK IRLYRHAQRF DDALAELEAF KRESLALIHK KELAFEEGAI
FAALQETSAA MRAFARGHQL AYAALSAEQQ EESFQFLMQL KDRAALIEQA QVATDGPSTE
ASPIFFLGFP CSGSSLLSSL LDNHLSLSSM LEKSSLAVVW EKLVQEHGLN ERHMGQLTPA
LRALGREYYW QACGVTPNAP AQWLDSMPLN VLYLPLLVQL FPNAKSVLLV RHPYGVCLSA
YMQDFQHNPT VAQFHELGTA ATLYSETMDF WCQAQHRFAL QPYTVRYEDL LSDATPVLQP
LLAYLGQPCD DVATLGEALS LSMQHPATHH CDWQAYGPYL HAVQAPLQRW LSYWGYDA
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