| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1665 |
|---|
| Symbol | |
|---|
| ID | 4480727 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 2066491 |
|---|
| End bp | 2067894 |
|---|
| Gene Length | 1404 bp |
|---|
| Protein Length | 467 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639722408 |
|---|
| Product | sigma-54 dependent trancsriptional regulator |
|---|
| Protein accession | YP_865580 |
|---|
| Protein GI | 117924963 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGTAA CGCCACGTCC AGAGCATCTG GAGTCGCTTT TTTACCAAAC GGATCCCGCC
ACGCTGTTGG ATGCCAACTA CCATATTCTT GCCACCAACC TCGCTTATCG CACGGCATTT
CATCAAGGTC ATGAGGTGGC GGGACGCGCT TGCTATGACG TTTCCCATGG ATTTAACCGC
CCTTGTGACG AGGTCGGCGA GTGTTGCCCC TTAAAATTGA GCATCCAATC GGGGGTGCGC
TCAACGATGT TGCATGTACA CCACCTAGCT CATGGTAAAG AGTATGTGCG TGTAGAAATT
GAGCCGATTT TTGACGGGGC CGAAAGTGCG CTTTATTACA AAGAAGTGTT GCGGCGCACC
TTTATCGCGA GTGCCGAACC CAAAGCCCAT GGTTTGGTGG GAACCAGCCA CGCCTTTATC
AATTTGTTGG AAAAGGTGCA TCAGGTCGCA CCAGAGAGTG TGCCGGTCCT GCTGACGGGA
GAGTCCGGGA CAGGTAAAGA GCTGATCGCA CGGGCTGTAC ACGATGCCAG CAACCGGGCC
AATGGTCCCT TTGTGCCGGT CGAGTGCAGC GGGTTGACAG AAACACTGTT TGAAAGTGAG
TTGTTTGGAC ACCGCAAGGG GGCTTTTACC GGGGCTTTGA GCGATAAACA AGGGCTGGTC
GAAGCCGCCA GAGGCGGCAC ACTGTTTCTC GATGAAATTG GTGATGTGCC GCTGCTGCAA
CAGGTTAAAC TGTTGCGTTT GTTAGAGTCC CATACCTTTC GTAAGGTTGG GGAGACAGAG
GTGAAAAAAG CCGATTTTCG GCTCGTCTGC GCGACCAACC GAAACCTGGA CGAAAGGATG
GCACAGGGCC TGTTCAGACG GGATCTCTAC TACCGTATCA GCACGTTCCC CATTAAGCTG
CCAGCTTTGA GAGAAAGACG GCAGGATATT GGGTTGTTGG CCCACTCCAT TTTGATGCGT
GTCGCCCCAG AACGTAAACT ACGGCTCAGC CAAGGTGCCG AGCAGTTGCT GAAAAATTAC
GCCTTTCCCG GTAACATTCG CGAGTTGCTT AACCTGCTGG AAAGGGCACG TATTCTAAGC
TCTGAAAATC AGCTATCCAC CCATCATTTT CCCGCGCTCT GCCACGAAAC CACCGCCACC
GATGCCGCGC CGACGATCCA TCCCCACTTT GTACCACCGG AAGATAAGAT CCTTTCATTA
AAGGCACTGG AACAGCGCTA TCTTTCGTTC CTGCTTGAGA GACACACGGG TAACCAGGAA
TACCTCGCTC AAGCGCTGGG CGTAAGTCTG CGCACCTTAA CACGCAAAAT AGCCGCATTA
AAACGTAGCA CGGGTAGAGC CACCCCCGAG GCGGGCAGCC TAAAATCAGG ACAAGATAGG
CTTGTTTGTG AGCGGTCGTC TTAG
|
|---|
| Protein sequence | MSVTPRPEHL ESLFYQTDPA TLLDANYHIL ATNLAYRTAF HQGHEVAGRA CYDVSHGFNR
PCDEVGECCP LKLSIQSGVR STMLHVHHLA HGKEYVRVEI EPIFDGAESA LYYKEVLRRT
FIASAEPKAH GLVGTSHAFI NLLEKVHQVA PESVPVLLTG ESGTGKELIA RAVHDASNRA
NGPFVPVECS GLTETLFESE LFGHRKGAFT GALSDKQGLV EAARGGTLFL DEIGDVPLLQ
QVKLLRLLES HTFRKVGETE VKKADFRLVC ATNRNLDERM AQGLFRRDLY YRISTFPIKL
PALRERRQDI GLLAHSILMR VAPERKLRLS QGAEQLLKNY AFPGNIRELL NLLERARILS
SENQLSTHHF PALCHETTAT DAAPTIHPHF VPPEDKILSL KALEQRYLSF LLERHTGNQE
YLAQALGVSL RTLTRKIAAL KRSTGRATPE AGSLKSGQDR LVCERSS
|
|---|
| |