| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1235 |
|---|
| Symbol | |
|---|
| ID | 4484115 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 1535352 |
|---|
| End bp | 1537034 |
|---|
| Gene Length | 1683 bp |
|---|
| Protein Length | 560 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639721978 |
|---|
| Product | type III restriction enzyme, res subunit |
|---|
| Protein accession | YP_865152 |
|---|
| Protein GI | 117924535 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1061] DNA or RNA helicases of superfamily II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.159231 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTTAC GACCAAGGCA GAAACAGTTC GTGGAGCGGT CAGTGGCCGC TCTCCACGAA
CATGGGAACA CTCTGGGGGT TGCTCCTACC GGTGCAGGCA AGACGGTAAT GCTCTCTGCG
GTTATTGGCA ATATGCTCAG AAATGATGGT GGTAAAGCTT GCGTCCTTGC TCACCGGGAT
GAGCTGACCC GCCAGAATGT GATGAAGTTC ACCAAGGTCA ACCCTGGGTT CTCTACCTCC
GTGGTGGATG CCCGTGGCAA ATCGTGGCGC GGTCGCGCCA CCTTTGCCAT GGTGCCCACT
CTTGCCAGGC AGAAGAACCT GGATACCATG CCTGAACTTG GCTTGTTGGT CATTGACGAG
GCGCACCACG CCGCCGCCAA CAGCTACCGG CGGATCATTG ATACCGCTCT GGATCGTAAT
CCGGATTGCT GCATTTACGG TCTAACTGCC ACCCCCAATC GTGGTGATAA AAAGGCGCTA
CGCCCCATCT TCAGCAATGT CGCGGACCAA GTTCGCCTGG GTGAGTTGAT CACTGCAGGC
AATCTAGTCA AACCCCGTAC ATTCGTTGTC GATGTAGGCA CTCAGGATGC GTTGAAAAGC
GTACGGAAGA CAGCAGACGA CTTTGATATG GCCGAGGTGT CCCAAATCAT GAACAAGGCC
CCGGTTACCG AGGCCGTTAT CAAGCATTGG AAGGAAAAAG CCGGCACCCG AAAGACCATC
GTATTCTGCT CCACCGTGGA TCATGCCCAG AACGTTACAG ATGCTTTCAA CAATGCGGAT
GTGGAAGCTG TGATGGTCCA CGGAGAGCTT ACCACCGCAG AGCGCAAAGC TGCCTTGGCT
CGATTTGAAA AGGGCTCGGC CATGGTGGTT GTGAACGTGG CGGTTCTCAC AGAAGGCTAC
GATCATCCAC CCACATCCTG CGTAGTTCTG CTTCGGCCAA GTTCGTACAA ATCCACCATG
ATCCAGATGG TGGGACGCGG GCTGCGCACC GTGGATCCCG CCCTGTTCCC AGGACTGGTC
AAAACCGACT GTATTGTTCT GGATTTCGGC ACTTCATCCA TTCTCCATGG ATCTCTGGAG
CAGGATGTCA ACCTGGATGG AAAGGAGATC CAGGGAGCGG CTCCTACTAA GGAGTGTCCC
GAATGTCAGG CTATCGTGCC TTTGGCAGTC AGGGAGTGCT CCCTTTGTGG GTATGTGTGG
GAATCGGAAG TTACTGGAGA AGGGCCGGAA TCCATCACCG ACTTCATCAT GTCCGAGGTG
GACCTGCTCA AACGCTCCAG TTTCCGCTGG GTTGACCTGT TCGGAGATGA TGCCGCTATG
GTGGCCAACG GCTTCCACGC CTGGGGTGGG ATCTTCTTCC TCAATGGCAA CTGGCACGCT
GTGGGTGGAG CCAAGGGCCA GCCGACTAAG CTGCTCTCCA TAGGTGAACG TACCATCTGT
CTTGCTGCAG CCGATGACTG GCTCAATGAG AGCGAAACCG ATGAGTCGGC ACATAAAACC
AAATCCTGGC TCAACCAACC CCCAACGGAT AAGCAGCTTC AATATCTGCC ACCAGCCATG
CGCATGGATA TGGGGCTGAC CCGTTACCAC GCATCAGCGC TGCTGACCTT CCGCTTCAAT
AAGGCTGCCA TTCGCAGTTT GATCTTTGAA GCGGACCGAC AGGCACTGGC GGAGGTGGCG
TGA
|
|---|
| Protein sequence | MRLRPRQKQF VERSVAALHE HGNTLGVAPT GAGKTVMLSA VIGNMLRNDG GKACVLAHRD
ELTRQNVMKF TKVNPGFSTS VVDARGKSWR GRATFAMVPT LARQKNLDTM PELGLLVIDE
AHHAAANSYR RIIDTALDRN PDCCIYGLTA TPNRGDKKAL RPIFSNVADQ VRLGELITAG
NLVKPRTFVV DVGTQDALKS VRKTADDFDM AEVSQIMNKA PVTEAVIKHW KEKAGTRKTI
VFCSTVDHAQ NVTDAFNNAD VEAVMVHGEL TTAERKAALA RFEKGSAMVV VNVAVLTEGY
DHPPTSCVVL LRPSSYKSTM IQMVGRGLRT VDPALFPGLV KTDCIVLDFG TSSILHGSLE
QDVNLDGKEI QGAAPTKECP ECQAIVPLAV RECSLCGYVW ESEVTGEGPE SITDFIMSEV
DLLKRSSFRW VDLFGDDAAM VANGFHAWGG IFFLNGNWHA VGGAKGQPTK LLSIGERTIC
LAAADDWLNE SETDESAHKT KSWLNQPPTD KQLQYLPPAM RMDMGLTRYH ASALLTFRFN
KAAIRSLIFE ADRQALAEVA
|
|---|
| |