Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_1020 |
Symbol | |
ID | 4482341 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | + |
Start bp | 1251535 |
End bp | 1253181 |
Gene Length | 1647 bp |
Protein Length | 548 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 639721768 |
Product | inner-membrane translocator |
Protein accession | YP_864944 |
Protein GI | 117924327 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
TIGRFAM ID | [TIGR03409] urea ABC transporter, permease protein UrtB |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.205797 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATAGAT CCACCATGCA ACGATCCCTG AAATTTTTTC TGTGGTGTGC CTTGACGTGG GCGGTTTGCT TGACGGCACC CCTGGCGAAG GCAGCCAGCC AAGATGATCT GCAACGTCTG AATAATCGAT CTTTTTCTGT TAAAATGCAG GCGATTAAAG AACTTGGTGC CAGTGGTGAT CGGGCCTTAG TGCCCGCGCT GACCGCTTTG TTAGAGGGCA ACCTCTATGG ACGTAAAACC GATAACATGG TGGTGATCGG CCAAAAAAGC GGACAAGTTT ATCTATTGAT TGATCCATTA AGCGGTCAAG AGCTGGGGCA GGTGCAGGAG AGTGCGCTGG CCAAGATTGG CATCAACAAC CGGCTGCGGC GGTTGATTCG GGGTGCCCTG GGGGGCTTGA CCCTGCTGAG CAAAGATCCT GCCCTACGCT TACAGGCGGC CCAATCCATT TTTAATAGTC GGGATGTGGA GCTGCTGGAG AGCCTGCAAC AGGCCATTGC CCGCGAAGAG GATGCCACCA TTCTGGCTGC TATGCAGAAG GCCCAAGCGG TGATTGAGCT GTTTCATGGC GAGAGCTTGG AAAAACGCAA AGCAGCCGTG ATTTTGCTGG AACAGGTGGG TGGGCAGGAT GTGCGGGCGC TGCTCTCGCA ACTGGTGCAG GAGCCGGATC TGCACAACAA CCACGCGGAG CTGTATGGTG TGGTCAAGGC TGCGCTGGAG CGGGTTGAGG AGCGCTTAAG ACTATGGAAC ATGGTGGGTA GCCTGTTCCA GGGCATCAGC CTGGGTTCGG TGTTGCTGTT GGCGGCGGTG GGGTTGGCCA TCACCTTTGG GGTGATGGGG GTGATCAATA TGGCCCATGG TGAGCTGGTT ATGTTGGGGG CCTATACCAC CTTTGTGGTA CAGGATCTGT TTCGGGCCTA TCTGCCGGAT TGGTTGGATT GGTCGTTGCT GGTGGCGGTG CCCATGGCCT TTTTGGTCTC TGGTCTGTTT GGGGTGGCCA TTGAACGGGG CATTATCCGC TTTTTGTATG GGCGCCCCCT GGAGACCCTG TTGGCGACCT GGGGCTTGAG TTTAATGCTG CAACAGTTGG TGCGCACCCT GTTTGGACCC ACCAACCAAG AGGTCAGCAA CCCTTCATGG ATGAGTGGGG CGATTCAAAC CAGTCAGGGC TTGGTGCTCA CCTATAACCG TATCACCATC ATTCTCTTTT CGCTGGCGGT GATCGGTTCC TTGGCGTTGG TGTTGCGCAA AACCTCGCTG GGTTTGCAGA TGCGCGCGGT GACGCAAAAC CGCCGCATGG CCGGCTCCAT GGGCATCCGT ACCGGCTGGG TGGACGCGCT AACCTTTGGT TTGGGGGCGG GTATTGCGGG CATCGCGGGG GTGGCGCTTA GTCAGGTGGA CAATGTTTCA CCCAACCTGG GGCAGAGCTA CATTATTGAT AGCTTTATGG TGGTGGTGTT TGGTGGGGTG GGCAACCTGT GGGGCACTCT GGTGGGGGCC TTTAGCTTGG GGGTGTTGAA TAAATTTATG GAGCCCTTGG CAGGGGCGGT GCTGGGTAAA ATTTTGGTGC TGGTCGGCAT TATTCTGTTC ATTCAAAAAC GCCCCAGGGG ATTGTTTGCC CTAAAAGGGC GGGCGGTGGA GGCATAA
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Protein sequence | MDRSTMQRSL KFFLWCALTW AVCLTAPLAK AASQDDLQRL NNRSFSVKMQ AIKELGASGD RALVPALTAL LEGNLYGRKT DNMVVIGQKS GQVYLLIDPL SGQELGQVQE SALAKIGINN RLRRLIRGAL GGLTLLSKDP ALRLQAAQSI FNSRDVELLE SLQQAIAREE DATILAAMQK AQAVIELFHG ESLEKRKAAV ILLEQVGGQD VRALLSQLVQ EPDLHNNHAE LYGVVKAALE RVEERLRLWN MVGSLFQGIS LGSVLLLAAV GLAITFGVMG VINMAHGELV MLGAYTTFVV QDLFRAYLPD WLDWSLLVAV PMAFLVSGLF GVAIERGIIR FLYGRPLETL LATWGLSLML QQLVRTLFGP TNQEVSNPSW MSGAIQTSQG LVLTYNRITI ILFSLAVIGS LALVLRKTSL GLQMRAVTQN RRMAGSMGIR TGWVDALTFG LGAGIAGIAG VALSQVDNVS PNLGQSYIID SFMVVVFGGV GNLWGTLVGA FSLGVLNKFM EPLAGAVLGK ILVLVGIILF IQKRPRGLFA LKGRAVEA
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