Gene Mmc1_1019 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmc1_1019 
Symbol 
ID4482340 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMagnetococcus sp. MC-1 
KingdomBacteria 
Replicon accessionNC_008576 
Strand
Start bp1250201 
End bp1251475 
Gene Length1275 bp 
Protein Length424 aa 
Translation table11 
GC content53% 
IMG OID639721767 
ProductABC-type branched-chain amino acid transport system, periplasmic component 
Protein accessionYP_864943 
Protein GI117924326 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID[TIGR03407] urea ABC transporter, urea binding protein 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.18333 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTATGC GGTTTAAACA TCTGCTGGGT GCGGGAGCCA TTGCGGCAAG TTTACTGGGG 
GCTGGTTTGG CCCAAGCGGC GGAGACCATT AAGGTTGGTG TGTTGCACTC GTTATCGGGG
ACCATGGCGA TCAGTGAAAC CACGCTTAAA GACACGGTTT TAATGATGGT GGATGACCTG
AACAAAAAGG GCGGTTTGTT GGGTAAAAAG GTTGAGGCGG TGGTGGTGGA TCCCGCTTCC
AACTGGCCCT TGTTTGCGGA AAAAACCCGT GAGTTGATTG AAAAAGAGAA GGTGGACGTT
ATCTTTGGTT GCTGGACCTC GGTAAGCCGC AAATCGGTTT TGCCGGTTAT TGAAGAGCTC
AATGGTCTGC TCTTCTACCC GGTGCAGTAT GAGGGTGAAG AGAGCTCCCG CAATGTCTTC
TATACCGGAG CGGCCCCCAA CCAGCAGGCG ATTCCTGCGG TGGATTATCT GCTCAGCGAA
GAGGGCGGTG CCGCCAAGCG CATCGTGCTG CTGGGTACCG ACTATGTCTA CCCCCGCACC
ACCAACAAAA TTTTACGCGC CTACCTGAAC AGCAAGGGTA TCTCCGACGC GGATATTATG
GAGAACTACA CCCCCTTTGG TCACTCCGAC TGGCAAACCA TTGTGGGCGA TGTGAAAAAG
TTCGCCTCGG CGGGTAAAAA GACCGCTGTG GTTTCCACCA TCAATGGCGA CGCCAACGTA
CCCTTTTACA AAGAGCTGGC CAACCAGGGC ATCAAGGCGG AAGAGATCCC TGTGGTAGCC
TTCTCGGTGG GTGAAGAGGA GCTCTCCGGT ATTGACGCCA AGCCCCTGGT TGGTCACTTG
GCCGCCTGGA ACTACTTTAT GAGCGTGAAT AACGACACCA ATGCCGCCTT TATCAAAAAG
TGGCACGCCT TTATTAAAGA CAGCAAGCGC GTCACCAATG ATCCCATGGA GGCCACCTAC
ATTGGCTTTA ATATGTGGGT GCAAGCGGTG GAGCAGGCGG GTACCGCGAA TGTGGATGCG
GTGCGTCAAG CCATGTATGG CCAAAAGGTG CCTAACCTCA CTGGCGGTAT GGCAGTAATG
AACAGCAACC ACCACCTCTC CAAGCCGGTG CTGATCGGTG AAATTCAACC CGATGGTCAG
TTTGAAACGG TTTGGAAAAC CGAAGGTACC GTGGTGGGTG ACGCATGGTC CGACTTTATT
CCCCAGTCGG CCAAATTGAC CGCCGATTGG ACCTACCCCT GGGTTTGCGG TAACTGCGAA
AAACCCAAAT ATTAA
 
Protein sequence
MSMRFKHLLG AGAIAASLLG AGLAQAAETI KVGVLHSLSG TMAISETTLK DTVLMMVDDL 
NKKGGLLGKK VEAVVVDPAS NWPLFAEKTR ELIEKEKVDV IFGCWTSVSR KSVLPVIEEL
NGLLFYPVQY EGEESSRNVF YTGAAPNQQA IPAVDYLLSE EGGAAKRIVL LGTDYVYPRT
TNKILRAYLN SKGISDADIM ENYTPFGHSD WQTIVGDVKK FASAGKKTAV VSTINGDANV
PFYKELANQG IKAEEIPVVA FSVGEEELSG IDAKPLVGHL AAWNYFMSVN NDTNAAFIKK
WHAFIKDSKR VTNDPMEATY IGFNMWVQAV EQAGTANVDA VRQAMYGQKV PNLTGGMAVM
NSNHHLSKPV LIGEIQPDGQ FETVWKTEGT VVGDAWSDFI PQSAKLTADW TYPWVCGNCE
KPKY