| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_0972 |
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| Symbol | |
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| ID | 4480494 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 1187335 |
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| End bp | 1190085 |
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| Gene Length | 2751 bp |
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| Protein Length | 916 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 639721720 |
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| Product | DNA helicase/exodeoxyribonuclease V, subunit B |
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| Protein accession | YP_864896 |
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| Protein GI | 117924279 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3893] Inactivated superfamily I helicase |
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| TIGRFAM ID | [TIGR03623] probable DNA repair protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00798755 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATTGCCA GCACAGCAGA GAACCAAATG CAGCGAGAGG CCTTACCCCT TTGTGTGGGC
GAAGCGGCGC TGTTTGCGCA GATGGATGCC GGAGCGGTGG TGGTCACGGT CAATCGTCGT
TTGGCGCGCT GGCTGCGGCA CCGCCATGGT GAGGCCAAGA TGGCACAGGG TTTGATAGCT
TGGGCCACCC CAGATCTGCT GGCTTGGGGG AGCTGGTTAG AGCGCTGCTG GCGGCAGGCG
GTGGCGACCG CAGCGGTGCA GGGCAAAGCC CGGGAGTTGC CGCGCTTGAT GAATGGCGAG
CAGGAGCGCC TTATCTGGTC GGCGGTGGTG CGTCAGTCGG AGGTTGGACA AAGCTTGCTT
TCGCCGCACG GGGCCGCCGA AGGGGCGCGG CAAGCTTGGG TGCTACTGGC ACAGTGGGGG
GTTACGCAAG AGCTGTTGCG CCAGCAACCG GAGCCGGAAA CCCAAGTGCT GTTGCAGTGG
ATAGAAGCCT ACCAACAGCG CTTACAGCGG GAGGGGTTGT TGGATGCCCA GCAATTAAGC
AGTCAGTTGC TTAGTCGTGC GGCTTGTTGG CAGCCGCCCA GGCAGTTGAT CGTGGCGGGT
TTTGATGATG TTTCCCCCCA GATGCAGCAT TTTTTACAGG TTTTAGCCGG TGAGCATGGG
GTCATGGTCA ACCAATGGCT GCCGGAGCCG CTACAACCCC ACAGCATGCA GCGTTGGGGC
TTTGCCGATC AGGAGCAGGA GCTGTTGGCC ATGGCCCGTT GGGTGCGTCA GCAGTTGGAG
GCAGGGGTGC GCAATATTGG GGTGGTGGCA CCCAACCTGC CGGAGATCAA GAGCGGTTTG
GCGCGTACTT TGGCGGCGGT GTTAACCCCT GGTTTTGATC GTCCCCACAG CCCCCCGCAG
CCCTTGCCGG TGAACATTTC GAGTGGGTCA GCGTTGGCCC ACACGCCGGT GGTGGCCGAT
GCGCTGCTGC TGTTGCACTT TTTGCAAGAG CCTTTATTGC CCGCTGCTTG GGCAGCGCTG
TTGCGCTCTC CCTATTTTAG CGGGGGTGAA AAGGGGCGCG ATAGCCGGGG GGCCTTGGAG
GCCAAATTGC GCGCTCTTGG CTGCTTTAGC CTGAATGTGA CACAGATGTG TAGGTTGTTG
GAGACACATA AGCGCAGCGA AAACAGTTGG TATGAACGCA TCAACCGCTT GGCCCAGCTG
GAGTTGGATA AAGCGTTGCC CTTAGGGCGG TGGGCGGCCC GGGTGAGTCG TTGGTTGGAG
CTGATGGGTT GGCCCGGTAC GGACCGTGCC CTAGACAGTC GAGAGTATCA GGCGGTAAGT
GCATGGCGGG ATCTGCTCAC CCAGTGGGCG GCGTTGGAAC ATACCGCGCC CGCTTTACCG
TGGGAGAGCG CATTAGGGCT GTTACAGGGC ATGGCGTTAC GGCGGGATTT CCAACCCGAT
GGCGGCGAAG CACCGGTGCG GGTGATGGGG GTTTTGGAGT CGGCGGGGGA GCGCTTTGAC
GCCTTGTGGT TGCTGGATAT GCGGGACGAA CAGTGGCCCC CCGCACCCAT GCCCAACCCC
TTTCTGCCGT TGGCCTTGCA GCGTCAATGG GGCATGCCCC GCGCCTCGGC AGAGCGGGAG
CTCACATTTG CTCGCCAGAT TACCCAGCGG CTGCGGCAGG CGGCGAAAAC CGTGGTGGTT
AGTTGGTGCC GCAGTGATGG AGATCGGGAT TTTCTAATCT CCCCGCTGTG GTCCGATCTC
CCTCTGGCCC CAGTGACGGC CTCTCCCCCG GACTATCCGT TGGATGCCCA GCTTATTGCG
GCGGCGGGGC GCTGGCAGGC ATACGATGGA GCGGCTTCGA TCCCGCTGAC GTGCCCCCCT
CAGTCGGTAC TGCCCGGTGG TGCGGCGCTG GTTAAAAACC AAGCCAGTTG CCCTTTTAAA
GCCTTTGCCC TGCACCGGTT GCAGGCCAAA GGGTTGGAGG TAACGGTGCC GGGTGCGGAT
GATCGGCGGC GAGGCACCTT GGCCCATGTC ATGTTGGAAA AATTCTGGAA AACCGTACAG
AGTGAGGCAA ACTTGCGTCA GGCTCGCATT GCGCAGCGCC AGCAGTGGGT GGCGCAGGCG
GTGGCGGCGG CGCTGCAAAA ATGGACGGTT CAAGGGGATT TTGCAGGGCT GGAGCAGCAG
CGTTTGCAGC AGCTCATGGC GCGTTGGATC GACGTGGAGC TGGCCCGTGC GCCGGGTTTT
GTGGTGGAGG TTGCCGAAGA TCCCCAAAAG CTTGCCATCG CTGGGGCCAC GCTAGAGCTA
CGGCTGGACC GGCTGGACCG GTTGGCCGAT GGGCGACATC TGTTAATCGA CTATAAATCG
GGTCAGCCCA CCACAAAAGA TTGGCAGGGG CCACGCATGA GCGATCCCCA ATTACCCCTT
TACACCCTGC TTAGCCATGC ACAGGGGGCG CTGCATGTGG CGGGTTTGGC GTTTGCCTCG
CTCAAAGCCA ACAAGGGCGA CAAACCCTGG ATCGGTATGG GGGAGGAGGC CGAATTGCTA
CCCGGCTTAA AGGCGTGGAA ACCCGTAGGC GAAGAGAGTC AAGCCCAAAG CTGGCCAGCG
CAGTTAAGCG AGTGGCGGCA GTGGTTGACC GAGCTGGTGG AGGCATTTAT GGCAGGCTCA
GCGGCGGTGG ACCCCCATGA GGGTGACAAG GGGTGTGGCT ATTGTGATTT GAGCCCGCTG
TGTCGTAAAG AGCAGTTACG GCAAGGGGAG GTGCAAGATG TCGCTGGTTG A
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| Protein sequence | MIASTAENQM QREALPLCVG EAALFAQMDA GAVVVTVNRR LARWLRHRHG EAKMAQGLIA
WATPDLLAWG SWLERCWRQA VATAAVQGKA RELPRLMNGE QERLIWSAVV RQSEVGQSLL
SPHGAAEGAR QAWVLLAQWG VTQELLRQQP EPETQVLLQW IEAYQQRLQR EGLLDAQQLS
SQLLSRAACW QPPRQLIVAG FDDVSPQMQH FLQVLAGEHG VMVNQWLPEP LQPHSMQRWG
FADQEQELLA MARWVRQQLE AGVRNIGVVA PNLPEIKSGL ARTLAAVLTP GFDRPHSPPQ
PLPVNISSGS ALAHTPVVAD ALLLLHFLQE PLLPAAWAAL LRSPYFSGGE KGRDSRGALE
AKLRALGCFS LNVTQMCRLL ETHKRSENSW YERINRLAQL ELDKALPLGR WAARVSRWLE
LMGWPGTDRA LDSREYQAVS AWRDLLTQWA ALEHTAPALP WESALGLLQG MALRRDFQPD
GGEAPVRVMG VLESAGERFD ALWLLDMRDE QWPPAPMPNP FLPLALQRQW GMPRASAERE
LTFARQITQR LRQAAKTVVV SWCRSDGDRD FLISPLWSDL PLAPVTASPP DYPLDAQLIA
AAGRWQAYDG AASIPLTCPP QSVLPGGAAL VKNQASCPFK AFALHRLQAK GLEVTVPGAD
DRRRGTLAHV MLEKFWKTVQ SEANLRQARI AQRQQWVAQA VAAALQKWTV QGDFAGLEQQ
RLQQLMARWI DVELARAPGF VVEVAEDPQK LAIAGATLEL RLDRLDRLAD GRHLLIDYKS
GQPTTKDWQG PRMSDPQLPL YTLLSHAQGA LHVAGLAFAS LKANKGDKPW IGMGEEAELL
PGLKAWKPVG EESQAQSWPA QLSEWRQWLT ELVEAFMAGS AAVDPHEGDK GCGYCDLSPL
CRKEQLRQGE VQDVAG
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