Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_0872 |
Symbol | |
ID | 4480421 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | + |
Start bp | 1067659 |
End bp | 1068681 |
Gene Length | 1023 bp |
Protein Length | 340 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 639721620 |
Product | DNA-directed RNA polymerase, alpha subunit |
Protein accession | YP_864797 |
Protein GI | 117924180 |
COG category | [K] Transcription |
COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.000175135 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0357315 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTACAGGA ATTGGACTGA GCTGATCAAG CCTCACACCA TTGAACTGGG TGGGGATGAA ACTGAAATTC AGCGTAAGGC AACATTGGTT GCTGAACCGC TCGAACGGGG TTTCGGTACG ACTTTGGGTA ACGCATTGCG TAGAGTGCTG CTCTCTTCTT TGCAAGGTGC AGCGGTAAGT ACTGTTCGCA TTGAGGGTGT ACTACATGAA TTTTCTAGTG TACCCGGTGT TATCGAAGAT GTAACCGATA TCATTCTGAA CATTAAAGGG TTGGCACTCC GTATGGAGTC CACAGGTATT AAAAATATCT ATCTTCGGGT AGATAAAGAA GGACCTGTGA CGGCCGGCAT GATTGAGTGT GAGACAGGGA TTGAGATTCT TAATCCTGAT CACCACATTG CAACCCTGAA TAAAAGTGGC ACCTTGGATA TCACCATGAC CGTTACCACT GGTAAAGGTT ATGTACGTGC ACAGCTTAAT CGTGAAGATG AAAGCTACGC CATTGGTGAT ATTCCCATTG ATGCAAGCTA TAACCCAGTC AAGAAAGTGG CTTACCGGGT GGAAAACGCT CGTGTGGGTC AGCAGACGGA CTATGACAAG CTGATTATGG ATATTGAAAC CAACGGTGTG GTAACCCCTG AGGATGCCCT GGCGTTGGCG GCTAAAATTC TACAAGATCA GTTAAACCCC TTCATCAATT TTGATGATGT GCCGACGGCA CATGATCATG AAATGGAGGA TCGGCCCCAG TGGAATCCTA ACCTTTTCCG CAAGGTGGAT GAGCTGGAAC TTTCGGTACG TAGTGCCAAC TGCCTTAAAA ACGATGATAT CGTTTATATT GGTGATTTGG TGCAAAAAAG CGAATCCGAG ATGCTCAAGA CGCCAAACTT TGGTCGTAAG TCTCTGAATG AGATCAAAGA AGTCTTGGAT GAAATGGGGC TGTCGCTGGG TATGACGTTG GATACCTGGC CTCCTGAGAA CATCGACGAT CTGTCTAAGC AGTTCGAAGA AGAGAACTTT TAA
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Protein sequence | MYRNWTELIK PHTIELGGDE TEIQRKATLV AEPLERGFGT TLGNALRRVL LSSLQGAAVS TVRIEGVLHE FSSVPGVIED VTDIILNIKG LALRMESTGI KNIYLRVDKE GPVTAGMIEC ETGIEILNPD HHIATLNKSG TLDITMTVTT GKGYVRAQLN REDESYAIGD IPIDASYNPV KKVAYRVENA RVGQQTDYDK LIMDIETNGV VTPEDALALA AKILQDQLNP FINFDDVPTA HDHEMEDRPQ WNPNLFRKVD ELELSVRSAN CLKNDDIVYI GDLVQKSESE MLKTPNFGRK SLNEIKEVLD EMGLSLGMTL DTWPPENIDD LSKQFEEENF
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