| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_0845 |
|---|
| Symbol | |
|---|
| ID | 4481052 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 1054110 |
|---|
| End bp | 1055300 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639721593 |
|---|
| Product | elongation factor Tu |
|---|
| Protein accession | YP_864770 |
|---|
| Protein GI | 117924153 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0050] GTPases - translation elongation factors |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00485] translation elongation factor TU |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000420071 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.0000129254 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGG AAAAGTTTGC ACGTACTAAA CCCCACGTCA ACATTGGCAC AATTGGCCAC
GTTGACCATG GTAAGACCAC ATTGACCGCT GCGATCACCA AGGTGATGGC GGCTGCGGGT
CGCGCGGAGT TTCGCGCCTA TGATCAAATT GACGGCGCTC CTGAAGAGCG TGAGCGTGGT
ATTACCATCT CCACCGCCCA CGTTGAGTAT GAGACCGAGG CACGTCACTA TGCCCACGTT
GACTGCCCTG GACACGCAGA CTATGTGAAA AACATGATCA CCGGTGCTGC ACAGATGGAC
GGCGGTATTC TGGTGGTGAG TGCGGCGGAC GGCCCCATGC CCCAGACCCG CGAGCACATC
CTGCTGGCCC GTCAGGTTGG TGTGCCTGCG CTGGTTGTCT TCCTGAACAA GGTTGATCAG
GTGGATGACG AAGAGCTGCT TGAGTTGGTG GAGATGGAAG TGCGTGAACT TCTCTCTTCT
TACGACTTCC CTGGCGACGA TATCCCCGTC ATTAAGGGTT CTGCGTTGAA GGCTCTTGAG
GGTGAAGAGT CGGAGATGGG GGTTGATGCG ATCAACAGGT TAATGGATGC CGTTGACGCC
TACATTCCAG AGCCTGAGCG TCCCCTGGAC CAAGCTTTCT TGATGCCCAT TGAAGATGTG
TTCACCATCT CCGGTCGTGG TACGGTGGTA ACGGGTCGTA TTGAGCGCGG TATTGTTAAA
GTAGGCGAGC AAGTTGCCAT CATCGGTATT AAAGATACCG TTGTGACCAC CTGTACCGGC
GTTGAGATGT TCCGTAAATT GCTGGATCAA GGTCAGGCTG GCGACAACGT GGGTGTGCTA
CTGCGTGGCA CCAAGCGTGA GGATGTGCAA CGTGGTCAGG TGTTGGCTGC GCCCAACTCG
ATCAAGCCGC ACACCAAGTT TAATGCTGAG TCGTACATTC TAACCAAAGA AGAGGGCGGT
CGTCACACCC CATTCTTCTC GAACTATCGT CCCCAGTTTT ACTTCCGCAC CACCGACGTA
ACCGGTGTGT TGAAGCTGCC TGAGGGTGTA GAGATGGTTA TGCCAGGTGA TAACATCACC
ATGGAAGTTG AACTGATCGC CCCCATCGCC ATGGAAAAAG GTCTGCGCTT CGCCATTCGC
GAAGGTGGCC GTACCGTCGG CGCAGGCGTG GTTGCCGAAG TAATTGACTG A
|
|---|
| Protein sequence | MAKEKFARTK PHVNIGTIGH VDHGKTTLTA AITKVMAAAG RAEFRAYDQI DGAPEERERG
ITISTAHVEY ETEARHYAHV DCPGHADYVK NMITGAAQMD GGILVVSAAD GPMPQTREHI
LLARQVGVPA LVVFLNKVDQ VDDEELLELV EMEVRELLSS YDFPGDDIPV IKGSALKALE
GEESEMGVDA INRLMDAVDA YIPEPERPLD QAFLMPIEDV FTISGRGTVV TGRIERGIVK
VGEQVAIIGI KDTVVTTCTG VEMFRKLLDQ GQAGDNVGVL LRGTKREDVQ RGQVLAAPNS
IKPHTKFNAE SYILTKEEGG RHTPFFSNYR PQFYFRTTDV TGVLKLPEGV EMVMPGDNIT
MEVELIAPIA MEKGLRFAIR EGGRTVGAGV VAEVID
|
|---|
| |